Rroxscaffold_4G00294070

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000388
Physical Location & Seq
Reverse (-)
14276979 .. 14277761
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294070.1

Sequence Viewer

Length: 240 bp
ATGATCGAGCCACTTCACATTGCAGAATACTACAAGGATGGTAAGAAAAATTATAGAAGCGGTGGTGAAAGGCCTAAACAGTTCATTCTGTTGGAGCAATGGCTCAAGCAGAAGCAAGAGGAAGAGAAGAAGAAGAAAAAGCAAGAACAAGAGCAGGAGCCGAAGCAAGAGAAAGAGAAACCTCAAGCTAGGCAGCTAGCCCAAGTAATAAGAAAAGAGAGATGGTGTCTGCTAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

79

Amino Acids

9.69

Weight (kDa)

9.49

Isoelectric Point (pI)

90.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDS1_EP PF18117 1 - 53 7.3e-11 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AluBI AGCT 3 cut(s) 188, 196, 236
AluI AGCT 3 cut(s) 188, 196, 236
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 77
AsuNHI GCTAGC 2 cut(s) 196, 232
BbvI GCAGC 1 cut(s) 205
BccI CCATC 2 cut(s) 32, 216
BfaI CTAG 3 cut(s) 189, 197, 233
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 159
BmtI GCTAGC 2 cut(s) 200, 236
BpuEI CTTGAG 2 cut(s) 89, 168
Bse3DI GCAATG 2 cut(s) 18, 104
BseGI GGATG 1 cut(s) 43
BseMI GCAATG 2 cut(s) 18, 104
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 1 cut(s) 73
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 159
BspOI GCTAGC 2 cut(s) 200, 236
BsrDI GCAATG 2 cut(s) 18, 104
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 198, 234
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstV1I GCAGC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 198, 234
CviJI RGCY 8 cut(s) 10, 73, 103, 160, 188, 196, 200, 236
CviKI_1 RGCY 8 cut(s) 10, 73, 103, 160, 188, 196, 200, 236
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 73
FaiI YATR 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 3 cut(s) 189, 197, 233
GluI GCNGC 1 cut(s) 194
HaeIII GGCC 1 cut(s) 73
HphI GGTGA 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 23
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 94, 157
LpnPI CCDG 1 cut(s) 140
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 3 cut(s) 189, 197, 233
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 134, 139, 142, 145
MluCI AATT 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 2 cut(s) 112, 192
MseI TTAA 1 cut(s) 238
NdeII GATC 1 cut(s) 3
NheI GCTAGC 2 cut(s) 196, 232
NlaIV GGNNCC 1 cut(s) 159
PceI AGGCCT 1 cut(s) 73
PkrI GCNGC 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 3
SetI ASST 4 cut(s) 184, 190, 198, 238
SmlI CTYRAG 2 cut(s) 104, 183
SmoI CTYRAG 2 cut(s) 104, 183
Sse9I AATT 1 cut(s) 49
SseBI AGGCCT 1 cut(s) 73
SsiI CCGC 1 cut(s) 60
SspMI CTAG 3 cut(s) 189, 197, 233
StuI AGGCCT 1 cut(s) 73
TaaI ACNGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 6
TasI AATT 1 cut(s) 49
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TseI GCWGC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 73
XspI CTAG 3 cut(s) 189, 197, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.