RH6DG267200

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0000388
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG267200.1

Sequence Viewer

Length: 936 bp
ATGACTCACAACCAATTTAGCAGCGGTTTAGAATCGGCAAACTTGGTGGTGACCTCTGATCCGGTACACCAGGCATGGAGTGCGATTGAGAAACAAAAACAGATTAATCCAAATGCAGAACCGACTTTATGCAATGTAACCCAAGAATCAAATCTTACCATCATAGCTTTTGGCACTCCACTTGGCTCTCTTCTAGAGGAAGAAGGCTTGGTTTCATCGTCAGCTCTCAAGGCTGACAATTTCACTGACTTTGAATTTTTAGGCACCAAAAGCAACAAAAGTTTCTCGATTAATCAAGCAGCAATCAAGCTCTTTCGCGCCAACTACGATGAGCTGAATCGGAAGAAAACTAAGCTGATAGAGCTTAGCAAGACTTCACTAGTAATCATCACCGGACGATCTATGGGAGGCAGTGTGGCTACGCTCTTCACCTTATGGTTGTTGAAAGGGCTAGATTTATTGAAAACCAAACGCCCCCTTTGCATTACTTTTGGCTCACCCCTCGTTGGCGATGAACACCTCCGACAATGCGTGTTGCAATTCACAACATGGAAATCTTGCTTCTTGCATGTAGCCTCTAACCAAGATCCTACACCTAAACACTTTCTAACCCGAAATACAAGTGGTGCTTATAAGCCTTTTGGGACATTCCTATTATGCTCTTCATCCGGTTGTGCTTGCTCTGAGGACCCGGACCTCATTTTGGAACAGTTGGTGACAACCAATTCTCAAAGTGCGCAAAACCAAGATCCTAATATAGAGTTTCGTTACGGTCAAGCTTTGGAAGATCTCAAGCACAAGGCGTTATGTAAGAGCAGTTCCCAGTCTATTGAAAGGGAAAGAGATCCACTTCAAGCAAGCATTGTCACACAACTACTAGCAATTGGAGTTCTCGCACAGGTAGCAGAGTTTCAATGCATTTTGATGATCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

311

Amino Acids

34.22

Weight (kDa)

6.32

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 79 - 202 1.1e-15 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
Acc16I TGCGCA 1 cut(s) 738
AccB1I GGYRCC 1 cut(s) 263
AccII CGCG 1 cut(s) 318
AciI CCGC 1 cut(s) 24
AclWI GGATC 4 cut(s) 53, 581, 743, 839
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 2 cut(s) 506, 703
AgsI TTSAA 6 cut(s) 254, 445, 463, 833, 854, 914
AhlI ACTAGT 1 cut(s) 379
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 7 cut(s) 167, 224, 310, 334, 355, 364, 779
AluI AGCT 7 cut(s) 167, 224, 310, 334, 355, 364, 779
AlwI GGATC 4 cut(s) 53, 581, 743, 839
ApeKI GCWGC 2 cut(s) 21, 299
ApoI RAATTY 1 cut(s) 254
AseI ATTAAT 2 cut(s) 105, 291
AspLEI GCGC 2 cut(s) 320, 739
AspS9I GGNCC 2 cut(s) 688, 694
AsuC2I CCSGG 1 cut(s) 692
AsuHPI GGTGA 5 cut(s) 61, 382, 421, 489, 727
AvaII GGWCC 2 cut(s) 688, 694
BanI GGYRCC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 33, 311
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 71
BclI TGATCA 1 cut(s) 927
BcnI CCSGG 1 cut(s) 692
BcuI ACTAGT 1 cut(s) 379
BfaI CTAG 4 cut(s) 194, 380, 452, 878
BglII AGATCT 1 cut(s) 787
BisI GCNGC 2 cut(s) 22, 300
BlpI GCTNAGC 1 cut(s) 365
BlsI GCNGC 2 cut(s) 23, 301
Bme1390I CCNGG 2 cut(s) 71, 692
Bme18I GGWCC 2 cut(s) 688, 694
BmgT120I GGNCC 2 cut(s) 688, 694
BmiI GGNNCC 2 cut(s) 265, 690
BmrFI CCNGG 2 cut(s) 71, 692
BmrI ACTGGG 1 cut(s) 817
BmuI ACTGGG 1 cut(s) 817
Bpu1102I GCTNAGC 1 cut(s) 365
BpuEI CTTGAG 2 cut(s) 212, 776
BpuMI CCSGG 1 cut(s) 692
BsaWI WCCGGW 3 cut(s) 61, 392, 668
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 703
Bse1I ACTGG 1 cut(s) 823
Bse3DI GCAATG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 665
BseLI CCNNNNNNNGG 2 cut(s) 506, 703
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 1 cut(s) 823
BseXI GCAGC 2 cut(s) 33, 311
Bsh1236I CGCG 1 cut(s) 318
BshNI GGYRCC 1 cut(s) 263
BsiSI CCGG 4 cut(s) 62, 393, 669, 692
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 2 cut(s) 506, 703
BsmFI GGGAC 1 cut(s) 658
Bsp143I GATC 7 cut(s) 58, 398, 586, 748, 787, 844, 927
Bsp1720I GCTNAGC 1 cut(s) 365
BspACI CCGC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 676
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 265, 690
BspPI GGATC 4 cut(s) 53, 581, 743, 839
BspQI GCTCTTC 2 cut(s) 431, 667
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 823
BssMI GATC 7 cut(s) 58, 398, 586, 748, 787, 844, 927
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 711, 773
Bst6I CTCTTC 3 cut(s) 195, 431, 667
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 679, 859
BstDEI CTNAG 3 cut(s) 351, 365, 684
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 665
BstFNI CGCG 1 cut(s) 318
BstHHI GCGC 2 cut(s) 320, 739
BstKTI GATC 7 cut(s) 61, 401, 589, 751, 790, 847, 930
BstMBI GATC 7 cut(s) 58, 398, 586, 748, 787, 844, 927
BstMWI GCNNNNNNNGC 6 cut(s) 80, 230, 270, 361, 480, 902
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 572
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 69, 690
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 2 cut(s) 33, 311
BstX2I RGATCY 4 cut(s) 586, 748, 787, 844
BstYI RGATCY 4 cut(s) 586, 748, 787, 844
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 1 cut(s) 665
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 2 cut(s) 243, 418
Cac8I GCNNGC 2 cut(s) 679, 859
CfoI GCGC 2 cut(s) 320, 739
Cfr13I GGNCC 2 cut(s) 688, 694
Csp6I GTAC 1 cut(s) 65
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviAII CATG 3 cut(s) 75, 549, 569
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 3 cut(s) 351, 365, 684
DpnI GATC 7 cut(s) 60, 400, 588, 750, 789, 846, 929
DpnII GATC 7 cut(s) 58, 398, 586, 748, 787, 844, 927
Eam1104I CTCTTC 3 cut(s) 195, 431, 667
EarI CTCTTC 3 cut(s) 195, 431, 667
Eco47I GGWCC 2 cut(s) 688, 694
Eco91I GGTNACC 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 688
EcoO65I GGTNACC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 920
FaeI CATG 3 cut(s) 78, 552, 572
FalI AAGNNNNNCTT 2 cut(s) 613, 645
FaqI GGGAC 1 cut(s) 658
FatI CATG 3 cut(s) 74, 548, 568
FbaI TGATCA 1 cut(s) 927
Fnu4HI GCNGC 2 cut(s) 22, 300
FokI GGATG 1 cut(s) 652
Fsp4HI GCNGC 2 cut(s) 22, 300
FspBI CTAG 4 cut(s) 194, 380, 452, 878
FspI TGCGCA 1 cut(s) 738
GlaI GCGC 2 cut(s) 319, 738
GluI GCNGC 2 cut(s) 22, 300
HapII CCGG 4 cut(s) 62, 393, 669, 692
HhaI GCGC 2 cut(s) 320, 739
Hin1II CATG 3 cut(s) 78, 552, 572
Hin6I GCGC 2 cut(s) 318, 737
HinP1I GCGC 2 cut(s) 318, 737
HindIII AAGCTT 1 cut(s) 777
HinfI GANTC 4 cut(s) 4, 32, 146, 337
HpaII CCGG 4 cut(s) 62, 393, 669, 692
HphI GGTGA 5 cut(s) 61, 382, 421, 489, 727
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 4 cut(s) 58, 342, 524, 685
Hpy188III TCNNGA 2 cut(s) 194, 286
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 2 cut(s) 711, 773
HpyCH4V TGCA 6 cut(s) 116, 132, 483, 538, 568, 918
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 230, 270, 361, 480, 902
HpyF3I CTNAG 3 cut(s) 351, 365, 684
Hsp92II CATG 3 cut(s) 78, 552, 572
HspAI GCGC 2 cut(s) 318, 737
Ksp22I TGATCA 1 cut(s) 927
Kzo9I GATC 7 cut(s) 58, 398, 586, 748, 787, 844, 927
LguI GCTCTTC 2 cut(s) 431, 667
LpnPI CCDG 8 cut(s) 56, 75, 83, 406, 682, 705, 836, 884
Lsp1109I GCAGC 2 cut(s) 33, 311
MaeI CTAG 4 cut(s) 194, 380, 452, 878
MaeIII GTNAC 5 cut(s) 49, 136, 715, 767, 865
MalI GATC 7 cut(s) 60, 400, 588, 750, 789, 846, 929
MboI GATC 7 cut(s) 58, 398, 586, 748, 787, 844, 927
MboII GAAGA 6 cut(s) 182, 212, 355, 418, 654, 797
MfeI CAATTG 1 cut(s) 882
MflI RGATCY 4 cut(s) 586, 748, 787, 844
MluCI AATT 6 cut(s) 14, 238, 254, 539, 724, 882
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 8 cut(s) 64, 190, 401, 512, 530, 586, 679, 707
Mph1103I ATGCAT 1 cut(s) 920
MseI TTAA 2 cut(s) 105, 291
MslI CAYNNNNRTG 1 cut(s) 923
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 4 cut(s) 62, 393, 669, 692
MspR9I CCNGG 2 cut(s) 71, 692
MunI CAATTG 1 cut(s) 882
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 6 cut(s) 80, 230, 270, 361, 480, 902
NciI CCSGG 1 cut(s) 692
NdeII GATC 7 cut(s) 58, 398, 586, 748, 787, 844, 927
NlaIII CATG 3 cut(s) 78, 552, 572
NlaIV GGNNCC 2 cut(s) 265, 690
NmuCI GTSAC 3 cut(s) 49, 715, 865
NsbI TGCGCA 1 cut(s) 738
NsiI ATGCAT 1 cut(s) 920
NspI RCATGY 1 cut(s) 572
PciSI GCTCTTC 2 cut(s) 431, 667
PfeI GAWTC 3 cut(s) 32, 146, 337
PkrI GCNGC 2 cut(s) 23, 301
PpuMI RGGWCCY 1 cut(s) 688
PshBI ATTAAT 2 cut(s) 105, 291
PsiI TTATAA 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 69
PspEI GGTNACC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 265, 690
PspPI GGNCC 2 cut(s) 688, 694
PspPPI RGGWCCY 1 cut(s) 688
PsrI GAACNNNNNNTAC 2 cut(s) 802, 834
PsuI RGATCY 4 cut(s) 586, 748, 787, 844
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 923
SapI GCTCTTC 2 cut(s) 431, 667
SaqAI TTAA 2 cut(s) 105, 291
SatI GCNGC 2 cut(s) 22, 300
Sau3AI GATC 7 cut(s) 58, 398, 586, 748, 787, 844, 927
Sau96I GGNCC 2 cut(s) 688, 694
ScrFI CCNGG 2 cut(s) 71, 692
SinI GGWCC 2 cut(s) 688, 694
SmiMI CAYNNNNRTG 1 cut(s) 923
SmlI CTYRAG 2 cut(s) 227, 791
SmoI CTYRAG 2 cut(s) 227, 791
SpeI ACTAGT 1 cut(s) 379
Sse9I AATT 6 cut(s) 14, 238, 254, 539, 724, 882
SsiI CCGC 1 cut(s) 24
SspMI CTAG 4 cut(s) 194, 380, 452, 878
StyD4I CCNGG 2 cut(s) 69, 690
TaaI ACNGT 2 cut(s) 711, 773
TaqI TCGA 1 cut(s) 287
TasI AATT 6 cut(s) 14, 238, 254, 539, 724, 882
TfiI GAWTC 3 cut(s) 32, 146, 337
Tru1I TTAA 2 cut(s) 105, 291
Tru9I TTAA 2 cut(s) 105, 291
TscAI CASTG 2 cut(s) 250, 418
TseFI GTSAC 3 cut(s) 49, 715, 865
TseI GCWGC 2 cut(s) 21, 299
Tsp45I GTSAC 3 cut(s) 49, 715, 865
TspDTI ATGAA 3 cut(s) 204, 528, 654
TspRI CASTG 2 cut(s) 250, 418
VpaK11BI GGWCC 2 cut(s) 688, 694
VspI ATTAAT 2 cut(s) 105, 291
XapI RAATTY 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 1 cut(s) 572
XspI CTAG 4 cut(s) 194, 380, 452, 878
Zsp2I ATGCAT 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.