Rmu_co8259259.1_g000001

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8259259.1
OG0000388
Physical Location & Seq
Forward (+)
327 .. 805
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8259259.1_g000001.1.cds

Sequence Viewer

Length: 479 bp
atgttatcattgcaacaacaacagtcccaggatactaacaatctggttaggaagatgaaaaaccatgaaaggaagttattaattcagaagaagaagaattcggattctgacaagaaattgaatgaaatgaaaattcacatggcctacttggagtggtataaggactccaagcgtcaaaatattggatattatgacatgtacagaaacaagggcaatcaaacagacgttaaggttaacgagtataagaagaagctcatgaattactgggaggactctgtcacagaagtagagaacaagccccagttagaaggagctcactttcgagtccgttggctttatgcaggcacaaactacagagggatggttgaacgacttcacattgcagactactataaggatgggggtaaaaattaccgaactgatgctgggaaaaggcctaaacattttactctgttggaggaatggcatcaggagaagca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

159

Amino Acids

19.36

Weight (kDa)

9.55

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 97, 132
AfaI GTAC 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 2 cut(s) 121, 368
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 2 cut(s) 253, 314
AluI AGCT 2 cut(s) 253, 314
Alw21I GWGCWC 1 cut(s) 316
AoxI GGCC 2 cut(s) 141, 434
ApoI RAATTY 2 cut(s) 97, 132
AseI ATTAAT 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 372
BanII GRGCYC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 316
BccI CCATC 2 cut(s) 355, 392
BciT130I CCWGG 1 cut(s) 29
BciVI GTATCC 1 cut(s) 25
BfmI CTRYAG 1 cut(s) 352
BfuI GTATCC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 29
BmrI ACTGGG 2 cut(s) 274, 295
BmsI GCATC 2 cut(s) 412, 475
BmuI ACTGGG 2 cut(s) 274, 295
BsaJI CCNNGG 1 cut(s) 27
Bse1I ACTGG 2 cut(s) 269, 301
Bse3DI GCAATG 2 cut(s) 8, 378
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 366, 403
BseMI GCAATG 2 cut(s) 8, 378
BseNI ACTGG 2 cut(s) 269, 301
BseYI CCCAGC 1 cut(s) 425
BshFI GGCC 2 cut(s) 143, 436
BsiHKAI GWGCWC 1 cut(s) 316
BslFI GGGAC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 2 cut(s) 143, 436
Bsp1286I GDGCHC 1 cut(s) 316
Bsp1407I TGTACA 1 cut(s) 198
BspANI GGCC 2 cut(s) 143, 436
BspHI TCATGA 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 8, 378
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 2 cut(s) 269, 301
BssECI CCNNGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 343
BstF5I GGATG 2 cut(s) 366, 403
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 352
BsuI GTATCC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 143, 436
BtsCI GGATG 2 cut(s) 366, 403
Cac8I GCNNGC 1 cut(s) 343
CciI TCATGA 1 cut(s) 255
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 199
CviAII CATG 4 cut(s) 65, 139, 196, 256
CviJI RGCY 6 cut(s) 143, 253, 298, 314, 334, 436
CviKI_1 RGCY 6 cut(s) 143, 253, 298, 314, 334, 436
CviQI GTAC 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 314
Eco147I AGGCCT 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 316
FaeI CATG 4 cut(s) 68, 142, 199, 259
FaiI YATR 9 cut(s) 66, 140, 159, 192, 197, 243, 257, 339, 393
FaqI GGGAC 1 cut(s) 10
FatI CATG 4 cut(s) 64, 138, 195, 255
FokI GGATG 2 cut(s) 373, 410
FriOI GRGCYC 1 cut(s) 316
GsaI CCCAGC 1 cut(s) 429
HaeIII GGCC 2 cut(s) 143, 436
HgaI GACGC 1 cut(s) 161
Hin1II CATG 4 cut(s) 68, 142, 199, 259
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 4 cut(s) 104, 164, 272, 324
HpaI GTTAAC 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 3 cut(s) 87, 103, 109
Hpy188III TCNNGA 2 cut(s) 256, 470
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 13, 341, 383
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 4 cut(s) 68, 142, 199, 259
KspAI GTTAAC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 8 cut(s) 14, 29, 41, 250, 314, 327, 411, 455
LweI GCATC 2 cut(s) 412, 475
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 277
MboII GAAGA 5 cut(s) 64, 100, 103, 106, 259
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 6 cut(s) 81, 97, 116, 132, 259, 409
MlyI GAGTC 3 cut(s) 158, 266, 333
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 3 cut(s) 262, 350, 451
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 3 cut(s) 80, 228, 234
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
NlaIII CATG 4 cut(s) 68, 142, 199, 259
NmuCI GTSAC 1 cut(s) 277
NspI RCATGY 1 cut(s) 199
PagI TCATGA 1 cut(s) 255
PceI AGGCCT 1 cut(s) 436
PciI ACATGT 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 275
PleI GAGTC 3 cut(s) 158, 266, 332
PpsI GAGTC 3 cut(s) 158, 266, 332
PscI ACATGT 1 cut(s) 195
PshBI ATTAAT 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 27
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SacI GAGCTC 1 cut(s) 316
SaqAI TTAA 3 cut(s) 80, 228, 234
SchI GAGTC 3 cut(s) 158, 266, 333
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 316
SetI ASST 4 cut(s) 228, 234, 255, 316
SfaNI GCATC 2 cut(s) 412, 475
SfcI CTRYAG 1 cut(s) 352
Sse9I AATT 6 cut(s) 81, 97, 116, 132, 259, 409
SseBI AGGCCT 1 cut(s) 436
SspI AATATT 1 cut(s) 181
SstI GAGCTC 1 cut(s) 316
StuI AGGCCT 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 322
TasI AATT 6 cut(s) 81, 97, 116, 132, 259, 409
TatI WGTACW 1 cut(s) 198
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 3 cut(s) 80, 228, 234
Tru9I TTAA 3 cut(s) 80, 228, 234
TseFI GTSAC 1 cut(s) 277
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 5 cut(s) 71, 81, 138, 143, 272
TspGWI ACGGA 1 cut(s) 317
Tth111I GACNNNGTC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 80
XapI RAATTY 2 cut(s) 97, 132
XceI RCATGY 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.