Rh2AG620600

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000388
Physical Location & Seq
Reverse (-)
84442843 .. 84443769
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG620600.1

Sequence Viewer

Length: 927 bp
ATGATATCTATTTCTATACTTGCTCTTCAACTTCTGACTAAAATGTTATCATTGCAACAGCAGTCCTGTATGGATATCGACAATCTGGTTGGGAAGATGAAAAGACATGAAACAAAATTACTAATACAGAAGATGAAGAATTGGGATTCTGACAACAAGTTTAATGATGTTAAAATTCACATGGCCTACTTGGAGTGGTACAAGAAGGAGTCCAAAGATAAAGGTTATGGATACTATGACATGTACAGAAAGAAGGAGAAGCCAGCTGACGTTAAGGTTAACGAGTATAAGAAGAAACTCATGAATTACTGGGAGGACTCTGTCACAGAAATAGAGAACAGGCCTCGGTTAGAAGAAGGAGCTTACTTGCGGCTTCGTTGGCTTTATGGAGGCACAACCTACAGGAGGATGGTTGAACCACTTCACATTGCAGACTACTATAAGGATGGTGGGGAAAATTACCAAACCGAGGATGGGAAAAGGCCTAAACATTTTACTCTGTTGGAGAAATTGCATCAGGAGAAGCAGGAGCAAGAAGAGAAGAAGAAGGAGCAAGAAAAGAAGAAGAAGCAGGAAACACAGAAACAAGAAGAAAAACCAGAATCTGGCCCAAGCAAATCCAAAAGAAAGAACGTGGGTTCTAGTTTGAATGATGATTCTTGTTTTTGGGCACGTGTTGAGGAAGCTCTCATCTTGTTGAAGAAGGGAGGACTAACTACTGATGACAAAGGGAAGTTGAAAGAGTTTGAGGACTATGTGTGGATTGCTCTCAAGAATTATGCAGTGTCACCTGAGATTTTCTTGAAGAAGAGCAGTTTTATGAAATGGTGGAATGAGTATAAAGGAATTGTTGACAGCTCTTCATCGCTCTCGCACTTTATGAAAAATGGCGGTCCCAAAGAGTACGAGGAAGGGAAGTTTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

308

Amino Acids

36.58

Weight (kDa)

9.06

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDS1_EP PF18117 63 - 289 2.3e-57 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 605
AciI CCGC 2 cut(s) 370, 891
AcsI RAATTY 1 cut(s) 174
AcvI CACGTG 1 cut(s) 674
AfaI GTAC 3 cut(s) 200, 245, 905
AfiI CCNNNNNNNGG 4 cut(s) 405, 469, 474, 605
AflIII ACRYGT 2 cut(s) 240, 673
AgsI TTSAA 6 cut(s) 29, 416, 649, 700, 739, 805
AluBI AGCT 4 cut(s) 266, 362, 686, 858
AluI AGCT 4 cut(s) 266, 362, 686, 858
AlwNI CAGNNNCTG 1 cut(s) 605
AoxI GGCC 4 cut(s) 183, 341, 482, 607
ApoI RAATTY 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 608, 893
AsuHPI GGTGA 1 cut(s) 780
AvaII GGWCC 1 cut(s) 893
BaeGI GKGCMC 1 cut(s) 673
BbrPI CACGTG 1 cut(s) 674
BccI CCATC 3 cut(s) 403, 440, 467
BciVI GTATCC 1 cut(s) 224
BfaI CTAG 2 cut(s) 642, 925
BfmI CTRYAG 1 cut(s) 400
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 893
BmgT120I GGNCC 2 cut(s) 608, 893
BmiI GGNNCC 1 cut(s) 895
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 523
BmuI ACTGGG 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 755
BsaAI YACGTR 1 cut(s) 674
BsaJI CCNNGG 2 cut(s) 344, 468
Bsc4I CCNNNNNNNGG 4 cut(s) 405, 469, 474, 605
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 2 cut(s) 50, 426
BseDI CCNNGG 2 cut(s) 344, 468
BseGI GGATG 3 cut(s) 414, 451, 478
BseLI CCNNNNNNNGG 4 cut(s) 405, 469, 474, 605
BseMI GCAATG 2 cut(s) 50, 426
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 673
BshFI GGCC 4 cut(s) 185, 343, 484, 609
BslFI GGGAC 1 cut(s) 879
BslI CCNNNNNNNGG 4 cut(s) 405, 469, 474, 605
BsmFI GGGAC 1 cut(s) 879
BsnI GGCC 4 cut(s) 185, 343, 484, 609
Bsp1286I GDGCHC 1 cut(s) 673
Bsp1407I TGTACA 1 cut(s) 243
BspACI CCGC 2 cut(s) 370, 891
BspANI GGCC 4 cut(s) 185, 343, 484, 609
BspCNI CTCAG 1 cut(s) 784
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 895
BspQI GCTCTTC 3 cut(s) 30, 803, 865
BsrDI GCAATG 2 cut(s) 50, 426
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 344, 468
Bst6I CTCTTC 4 cut(s) 30, 531, 803, 865
BstAUI TGTACA 1 cut(s) 243
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 792
BstENI CCTNNNNNAGG 1 cut(s) 403
BstF5I GGATG 3 cut(s) 414, 451, 478
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNSI RCATGY 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 673
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 4 cut(s) 185, 343, 484, 609
BtgZI GCGATG 1 cut(s) 849
BtsCI GGATG 3 cut(s) 414, 451, 478
BtsI GCAGTG 1 cut(s) 789
BtsIMutI CAGTG 1 cut(s) 789
Cac8I GCNNGC 1 cut(s) 264
CaiI CAGNNNCTG 1 cut(s) 605
CciI TCATGA 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 608, 893
Csp6I GTAC 3 cut(s) 199, 244, 904
CviAII CATG 4 cut(s) 107, 181, 241, 301
CviQI GTAC 3 cut(s) 199, 244, 904
DdeI CTNAG 1 cut(s) 792
Eam1104I CTCTTC 4 cut(s) 30, 531, 803, 865
EarI CTCTTC 4 cut(s) 30, 531, 803, 865
Eco147I AGGCCT 2 cut(s) 343, 484
Eco32I GATATC 2 cut(s) 6, 76
Eco47I GGWCC 1 cut(s) 893
Eco72I CACGTG 1 cut(s) 674
EcoNI CCTNNNNNAGG 1 cut(s) 403
EcoRV GATATC 2 cut(s) 6, 76
FaeI CATG 4 cut(s) 110, 184, 244, 304
FaqI GGGAC 1 cut(s) 879
FatI CATG 4 cut(s) 106, 180, 240, 300
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 3 cut(s) 421, 458, 485
Fsp4HI GCNGC 1 cut(s) 371
FspBI CTAG 2 cut(s) 642, 925
GluI GCNGC 1 cut(s) 371
HaeIII GGCC 4 cut(s) 185, 343, 484, 609
Hin1II CATG 4 cut(s) 110, 184, 244, 304
HincII GTYRAC 2 cut(s) 280, 853
HindII GTYRAC 2 cut(s) 280, 853
HinfI GANTC 5 cut(s) 146, 209, 317, 602, 656
HpaI GTTAAC 1 cut(s) 280
HphI GGTGA 1 cut(s) 780
Hpy166II GTNNAC 3 cut(s) 280, 853, 921
Hpy188I TCNGA 2 cut(s) 36, 151
Hpy188III TCNNGA 4 cut(s) 301, 518, 772, 802
Hpy8I GTNNAC 3 cut(s) 280, 853, 921
HpyAV CCTTC 6 cut(s) 199, 247, 350, 541, 697, 905
HpyCH4IV ACGT 3 cut(s) 270, 633, 673
HpyCH4V TGCA 4 cut(s) 55, 431, 514, 782
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 1 cut(s) 792
HpySE526I ACGT 3 cut(s) 270, 633, 673
Hsp92II CATG 4 cut(s) 110, 184, 244, 304
KspAI GTTAAC 1 cut(s) 280
LguI GCTCTTC 3 cut(s) 30, 803, 865
LmnI GCTCC 3 cut(s) 359, 529, 550
LweI GCATC 1 cut(s) 523
MaeI CTAG 2 cut(s) 642, 925
MaeII ACGT 3 cut(s) 270, 633, 673
MaeIII GTNAC 2 cut(s) 322, 786
MhlI GDGCHC 1 cut(s) 673
MluCI AATT 8 cut(s) 116, 139, 174, 304, 457, 509, 775, 846
MlyI GAGTC 2 cut(s) 218, 311
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 9 cut(s) 307, 354, 383, 399, 463, 673, 701, 742, 901
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 4 cut(s) 162, 171, 273, 279
MspA1I CMGCKG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 379
NlaIII CATG 4 cut(s) 110, 184, 244, 304
NlaIV GGNNCC 1 cut(s) 895
NmuCI GTSAC 2 cut(s) 322, 786
NspI RCATGY 1 cut(s) 244
PagI TCATGA 1 cut(s) 300
PceI AGGCCT 2 cut(s) 343, 484
PciI ACATGT 1 cut(s) 240
PciSI GCTCTTC 3 cut(s) 30, 803, 865
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 146, 602, 656
PflFI GACNNNGTC 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 1 cut(s) 372
PleI GAGTC 2 cut(s) 217, 311
PmaCI CACGTG 1 cut(s) 674
PmlI CACGTG 1 cut(s) 674
PpsI GAGTC 2 cut(s) 217, 311
Ppu21I YACGTR 1 cut(s) 674
PscI ACATGT 1 cut(s) 240
PspCI CACGTG 1 cut(s) 674
PspN4I GGNNCC 1 cut(s) 895
PspPI GGNCC 2 cut(s) 608, 893
PstNI CAGNNNCTG 1 cut(s) 605
PsyI GACNNNGTC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 3 cut(s) 200, 245, 905
RsaNI GTAC 3 cut(s) 199, 244, 904
SapI GCTCTTC 3 cut(s) 30, 803, 865
SaqAI TTAA 4 cut(s) 162, 171, 273, 279
SatI GCNGC 1 cut(s) 371
Sau96I GGNCC 2 cut(s) 608, 893
SchI GAGTC 2 cut(s) 218, 311
SduI GDGCHC 1 cut(s) 673
SfaNI GCATC 1 cut(s) 523
SfcI CTRYAG 1 cut(s) 400
SinI GGWCC 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 8 cut(s) 116, 139, 174, 304, 457, 509, 775, 846
SseBI AGGCCT 2 cut(s) 343, 484
SsiI CCGC 2 cut(s) 370, 891
SspMI CTAG 2 cut(s) 642, 925
StuI AGGCCT 2 cut(s) 343, 484
TaiI ACGT 3 cut(s) 273, 636, 676
TaqI TCGA 1 cut(s) 78
TasI AATT 8 cut(s) 116, 139, 174, 304, 457, 509, 775, 846
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 3 cut(s) 146, 602, 656
Tru1I TTAA 4 cut(s) 162, 171, 273, 279
Tru9I TTAA 4 cut(s) 162, 171, 273, 279
TscAI CASTG 1 cut(s) 789
TseFI GTSAC 2 cut(s) 322, 786
Tsp45I GTSAC 2 cut(s) 322, 786
TspDTI ATGAA 7 cut(s) 113, 123, 149, 317, 836, 852, 896
TspRI CASTG 1 cut(s) 789
Tth111I GACNNNGTC 1 cut(s) 320
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 1 cut(s) 893
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 1 cut(s) 174
XceI RCATGY 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 2 cut(s) 642, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.