Rmu_sc0021809.1_g000001

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021809.1
OG0000388
Physical Location & Seq
Forward (+)
5879 .. 7764
1886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021809.1_g000001.1.cds

Sequence Viewer

Length: 1373 bp
atgaccatccaaaaccagtttagcagcggcttagaatcggggaattttgtggtgaactctgatccggtacaccaggcatggtgtgcgattgagcaaaaaagacaggttaatccaaatgcagagccatccttgtacaatgaaataatccaaccagaaaattcaatcgtcatagcttttggcactcctcctggctctcttcagggacaagaaggcttggtttcgtcaaaagattttgctcactttgaatttttgtgcaacaaaagcaatccagttttctccatcaatgaagcagctatcaaactattccagtcgcatcataatgacctcctcctcctgaaaaataagctggtagaaaacagcaagagcaaaaccccaccattaataatcatcactggacaatttttgggaggtagtgtggctacactcttcaccttgtggttgctagaaggcctcaacttgtcgaaaaccaaacgcccgctttgcattactttcggttctccacttgttggcgatgaacaccttcgaaaatgtgtgctagaattctcaacttggaagtcttgcttcttgcatatagtctccgaccaagatcatacaccgaaaatctttatgtcccaaaatacaactggtgcttatatgccgtttggaacattcttgttgtgctcggcttcgggttgtgcttgctctgaggagccggatttcatttcagaacaatttgtgacaaccaattctcccagtggtcaaactcaagatcctaatttggggttttcttatggacaaattttggaggatctcaagcggaaggcattatgtaatatattcaagtccattgaagggcaaagccatccgcttcaagctagcataatcacacaactcctagcaattggagtagtctcacaggatactgacaatctggtcaggaagatgaaaaaacatgaaacaaagttattaattcagaagaagaagaactcagattctgacaagaaattgaatgacatgaaaattcaaatggcctacttggagtggtacaagaaggacgccaaacgtcaaaatattggatactatgacttgtacagaatgatgggcaatcaacctgacaataacgttaacgggtttaagaggaagctcatgaattactgggaggactctgtcacagaagtagagaacaagccccagttagaaggagctcactttcgggttcgttggctttatgcaggcacaaactacagaggaatggttgaaccacttcacattgcagactactatagggatgggggtaaaaattaccaaactgatgggaaaaggcctaaacattttactctgttggaggaatggcatcaggagaagcaggagcaagaaaagaagaagaagaagga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

457

Amino Acids

52.02

Weight (kDa)

8.39

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 911
AccB7I CCANNNNNTGG 1 cut(s) 506
AciI CCGC 4 cut(s) 27, 476, 796, 845
AclI AACGTT 1 cut(s) 1101
AclWI GGATC 3 cut(s) 56, 743, 795
AcsI RAATTY 6 cut(s) 43, 157, 245, 539, 777, 999
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 1035
AdeI CACNNNGTG 1 cut(s) 435
AfaI GTAC 4 cut(s) 69, 134, 1025, 1070
AfiI CCNNNNNNNGG 3 cut(s) 506, 758, 831
AgsI TTSAA 8 cut(s) 162, 245, 820, 830, 851, 988, 1004, 1238
AjnI CCWGG 2 cut(s) 72, 187
AluBI AGCT 6 cut(s) 173, 293, 346, 854, 1123, 1184
AluI AGCT 6 cut(s) 173, 293, 346, 854, 1123, 1184
Alw21I GWGCWC 2 cut(s) 662, 1186
Alw26I GTCTC 2 cut(s) 580, 895
AlwI GGATC 3 cut(s) 56, 743, 795
AlwNI CAGNNNCTG 1 cut(s) 974
AoxI GGCC 3 cut(s) 448, 1008, 1301
ApeKI GCWGC 2 cut(s) 24, 290
ApoI RAATTY 6 cut(s) 43, 157, 245, 539, 777, 999
AseI ATTAAT 2 cut(s) 380, 947
Asp700I GAANNNNTTC 2 cut(s) 519, 1242
AsuHPI GGTGA 2 cut(s) 64, 421
AsuII TTCGAA 1 cut(s) 523
AsuNHI GCTAGC 1 cut(s) 854
BanII GRGCYC 1 cut(s) 1186
Bbv12I GWGCWC 2 cut(s) 662, 1186
BbvI GCAGC 2 cut(s) 36, 302
BccI CCATC 7 cut(s) 14, 133, 287, 849, 1072, 1262, 1286
BceAI ACGGC 1 cut(s) 622
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 2 cut(s) 74, 189
BciVI GTATCC 2 cut(s) 892, 1049
BcoDI GTCTC 2 cut(s) 580, 895
BfaI CTAG 4 cut(s) 443, 536, 855, 875
BfmI CTRYAG 2 cut(s) 1222, 1261
BfuI GTATCC 2 cut(s) 892, 1049
BisI GCNGC 3 cut(s) 25, 28, 291
BlsI GCNGC 3 cut(s) 26, 29, 292
Bme1390I CCNGG 2 cut(s) 74, 189
BmiI GGNNCC 1 cut(s) 690
BmrFI CCNGG 2 cut(s) 74, 189
BmrI ACTGGG 3 cut(s) 726, 1144, 1165
BmsI GCATC 2 cut(s) 322, 1342
BmtI GCTAGC 1 cut(s) 858
BmuI ACTGGG 3 cut(s) 726, 1144, 1165
Bpu14I TTCGAA 1 cut(s) 523
BpuEI CTTGAG 2 cut(s) 729, 776
BsaHI GRCGYC 1 cut(s) 1035
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 4 cut(s) 399, 429, 712, 742
Bsc4I CCNNNNNNNGG 3 cut(s) 506, 758, 831
Bse1I ACTGG 8 cut(s) 16, 269, 307, 397, 628, 732, 1139, 1171
Bse3DI GCAATG 1 cut(s) 1248
BseBI CCWGG 2 cut(s) 74, 189
BseGI GGATG 4 cut(s) 6, 125, 841, 1273
BseLI CCNNNNNNNGG 3 cut(s) 506, 758, 831
BseMI GCAATG 1 cut(s) 1248
BseMII CTCAG 2 cut(s) 675, 981
BseNI ACTGG 8 cut(s) 16, 269, 307, 397, 628, 732, 1139, 1171
BseRI GAGGAG 4 cut(s) 174, 317, 320, 701
BseXI GCAGC 2 cut(s) 36, 302
BshFI GGCC 3 cut(s) 450, 1010, 1303
BsiHKAI GWGCWC 2 cut(s) 662, 1186
BsiSI CCGG 2 cut(s) 65, 692
BslFI GGGAC 2 cut(s) 216, 595
BslI CCNNNNNNNGG 3 cut(s) 506, 758, 831
BsmAI GTCTC 2 cut(s) 580, 895
BsmFI GGGAC 2 cut(s) 216, 595
BsnI GGCC 3 cut(s) 450, 1010, 1303
Bsp119I TTCGAA 1 cut(s) 523
Bsp1286I GDGCHC 2 cut(s) 662, 1186
Bsp1407I TGTACA 2 cut(s) 132, 1068
Bsp143I GATC 4 cut(s) 61, 586, 748, 787
BspACI CCGC 4 cut(s) 27, 476, 796, 845
BspANI GGCC 3 cut(s) 450, 1010, 1303
BspCNI CTCAG 2 cut(s) 676, 980
BspHI TCATGA 1 cut(s) 1125
BspLI GGNNCC 1 cut(s) 690
BspOI GCTAGC 1 cut(s) 858
BspPI GGATC 3 cut(s) 56, 743, 795
BspT104I TTCGAA 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 1248
BsrGI TGTACA 2 cut(s) 132, 1068
BsrI ACTGG 8 cut(s) 16, 269, 307, 397, 628, 732, 1139, 1171
BssMI GATC 4 cut(s) 61, 586, 748, 787
BssNI GRCGYC 1 cut(s) 1035
Bst2UI CCWGG 2 cut(s) 74, 189
Bst6I CTCTTC 2 cut(s) 201, 431
BstACI GRCGYC 1 cut(s) 1035
BstAPI GCANNNNNTGC 1 cut(s) 83
BstAUI TGTACA 2 cut(s) 132, 1068
BstBI TTCGAA 1 cut(s) 523
BstC8I GCNNGC 4 cut(s) 476, 679, 856, 1213
BstDEI CTNAG 3 cut(s) 31, 684, 967
BstF5I GGATG 4 cut(s) 6, 125, 841, 1273
BstKTI GATC 4 cut(s) 64, 589, 751, 790
BstMAI GTCTC 2 cut(s) 580, 895
BstMBI GATC 4 cut(s) 61, 586, 748, 787
BstMWI GCNNNNNNNGC 3 cut(s) 83, 261, 480
BstNI CCWGG 2 cut(s) 74, 189
BstSCI CCNGG 2 cut(s) 72, 187
BstSFI CTRYAG 2 cut(s) 1222, 1261
BstV1I GCAGC 2 cut(s) 36, 302
BstX2I RGATCY 2 cut(s) 748, 787
BstXI CCANNNNNNTGG 1 cut(s) 1292
BstYI RGATCY 2 cut(s) 748, 787
BsuI GTATCC 2 cut(s) 892, 1049
BsuRI GGCC 3 cut(s) 450, 1010, 1303
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 4 cut(s) 6, 125, 841, 1273
BtsIMutI CAGTG 2 cut(s) 390, 739
Cac8I GCNNGC 4 cut(s) 476, 679, 856, 1213
CaiI CAGNNNCTG 1 cut(s) 974
CciI TCATGA 1 cut(s) 1125
CseI GACGC 1 cut(s) 1043
Csp6I GTAC 4 cut(s) 68, 133, 1024, 1069
CviAII CATG 4 cut(s) 78, 932, 994, 1126
CviQI GTAC 4 cut(s) 68, 133, 1024, 1069
DdeI CTNAG 3 cut(s) 31, 684, 967
DpnI GATC 4 cut(s) 63, 588, 750, 789
DpnII GATC 4 cut(s) 61, 586, 748, 787
DraIII CACNNNGTG 1 cut(s) 435
DrdI GACNNNNNNGTC 1 cut(s) 911
DseDI GACNNNNNNGTC 1 cut(s) 911
Eam1104I CTCTTC 2 cut(s) 201, 431
EarI CTCTTC 2 cut(s) 201, 431
Ecl136II GAGCTC 1 cut(s) 1184
Eco147I AGGCCT 2 cut(s) 450, 1303
Eco24I GRGCYC 1 cut(s) 1186
Eco53kI GAGCTC 1 cut(s) 1184
Eco57I CTGAAG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 1184
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 2 cut(s) 72, 187
EcoT38I GRGCYC 1 cut(s) 1186
FaeI CATG 4 cut(s) 81, 935, 997, 1129
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FaqI GGGAC 2 cut(s) 216, 595
FatI CATG 4 cut(s) 77, 931, 993, 1125
FauI CCCGC 1 cut(s) 483
Fnu4HI GCNGC 3 cut(s) 25, 28, 291
FokI GGATG 3 cut(s) 112, 828, 1280
FriOI GRGCYC 1 cut(s) 1186
Fsp4HI GCNGC 3 cut(s) 25, 28, 291
FspBI CTAG 4 cut(s) 443, 536, 855, 875
GluI GCNGC 3 cut(s) 25, 28, 291
HaeIII GGCC 3 cut(s) 450, 1010, 1303
HapII CCGG 2 cut(s) 65, 692
HgaI GACGC 1 cut(s) 1043
Hin1I GRCGYC 1 cut(s) 1035
Hin1II CATG 4 cut(s) 81, 935, 997, 1129
HincII GTYRAC 1 cut(s) 1105
HindII GTYRAC 1 cut(s) 1105
HinfI GANTC 3 cut(s) 35, 971, 1142
HpaI GTTAAC 1 cut(s) 1105
HpaII CCGG 2 cut(s) 65, 692
HphI GGTGA 2 cut(s) 64, 421
Hpy166II GTNNAC 3 cut(s) 55, 70, 1105
Hpy188I TCNGA 7 cut(s) 61, 580, 685, 706, 954, 970, 976
Hpy188III TCNNGA 5 cut(s) 334, 746, 916, 1126, 1337
Hpy8I GTNNAC 3 cut(s) 55, 70, 1105
HpyAV CCTTC 8 cut(s) 203, 440, 530, 793, 824, 1024, 1172, 1363
HpyCH4IV ACGT 2 cut(s) 1042, 1101
HpyCH4V TGCA 6 cut(s) 119, 255, 483, 568, 1211, 1253
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 261, 480
HpyF3I CTNAG 3 cut(s) 31, 684, 967
HpySE526I ACGT 2 cut(s) 1042, 1101
Hsp92I GRCGYC 1 cut(s) 1035
Hsp92II CATG 4 cut(s) 81, 935, 997, 1129
KspAI GTTAAC 1 cut(s) 1105
Kzo9I GATC 4 cut(s) 61, 586, 748, 787
LmnI GCTCC 3 cut(s) 688, 1181, 1348
Lsp1109I GCAGC 2 cut(s) 36, 302
LweI GCATC 2 cut(s) 322, 1342
MaeI CTAG 4 cut(s) 443, 536, 855, 875
MaeII ACGT 2 cut(s) 1042, 1101
MaeIII GTNAC 2 cut(s) 715, 1147
MalI GATC 4 cut(s) 63, 588, 750, 789
MboI GATC 4 cut(s) 61, 586, 748, 787
MboII GAAGA 7 cut(s) 188, 418, 931, 967, 970, 973, 1372
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 2 cut(s) 748, 787
MhlI GDGCHC 2 cut(s) 662, 1186
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 3 cut(s) 172, 603, 1302
MroXI GAANNNNTTC 2 cut(s) 519, 1242
MseI TTAA 5 cut(s) 108, 380, 947, 1104, 1113
MslI CAYNNNNRTG 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 2 cut(s) 65, 692
MspR9I CCNGG 2 cut(s) 74, 189
MunI CAATTG 1 cut(s) 879
MvaI CCWGG 2 cut(s) 74, 189
MwoI GCNNNNNNNGC 3 cut(s) 83, 261, 480
NdeII GATC 4 cut(s) 61, 586, 748, 787
NheI GCTAGC 1 cut(s) 854
NlaIII CATG 4 cut(s) 81, 935, 997, 1129
NlaIV GGNNCC 1 cut(s) 690
NmeAIII GCCGAG 1 cut(s) 641
NmuCI GTSAC 2 cut(s) 715, 1147
NspV TTCGAA 1 cut(s) 523
PagI TCATGA 1 cut(s) 1125
PceI AGGCCT 2 cut(s) 450, 1303
PdmI GAANNNNTTC 2 cut(s) 519, 1242
PfeI GAWTC 2 cut(s) 35, 971
PflFI GACNNNGTC 1 cut(s) 1145
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 3 cut(s) 26, 29, 292
PleI GAGTC 1 cut(s) 1136
PpsI GAGTC 1 cut(s) 1136
PshBI ATTAAT 2 cut(s) 380, 947
Psp124BI GAGCTC 1 cut(s) 1186
Psp1406I AACGTT 1 cut(s) 1101
Psp6I CCWGG 2 cut(s) 72, 187
PspGI CCWGG 2 cut(s) 72, 187
PspN4I GGNNCC 1 cut(s) 690
PstNI CAGNNNCTG 1 cut(s) 974
PsuI RGATCY 2 cut(s) 748, 787
PsyI GACNNNGTC 1 cut(s) 1145
RsaI GTAC 4 cut(s) 69, 134, 1025, 1070
RsaNI GTAC 4 cut(s) 68, 133, 1024, 1069
RseI CAYNNNNRTG 1 cut(s) 318
SacI GAGCTC 1 cut(s) 1186
SaqAI TTAA 5 cut(s) 108, 380, 947, 1104, 1113
SatI GCNGC 3 cut(s) 25, 28, 291
Sau3AI GATC 4 cut(s) 61, 586, 748, 787
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 2 cut(s) 74, 189
SduI GDGCHC 2 cut(s) 662, 1186
SfaNI GCATC 2 cut(s) 322, 1342
SfcI CTRYAG 2 cut(s) 1222, 1261
SfuI TTCGAA 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 2 cut(s) 744, 791
SmoI CTYRAG 2 cut(s) 744, 791
SseBI AGGCCT 2 cut(s) 450, 1303
SsiI CCGC 4 cut(s) 27, 476, 796, 845
SspI AATATT 1 cut(s) 1051
SspMI CTAG 4 cut(s) 443, 536, 855, 875
SstI GAGCTC 1 cut(s) 1186
StuI AGGCCT 2 cut(s) 450, 1303
StyD4I CCNGG 2 cut(s) 72, 187
TaiI ACGT 2 cut(s) 1045, 1104
TaqI TCGA 2 cut(s) 461, 523
TatI WGTACW 2 cut(s) 132, 1068
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 2 cut(s) 35, 971
Tru1I TTAA 5 cut(s) 108, 380, 947, 1104, 1113
Tru9I TTAA 5 cut(s) 108, 380, 947, 1104, 1113
TscAI CASTG 2 cut(s) 397, 739
TseFI GTSAC 2 cut(s) 715, 1147
TseI GCWGC 2 cut(s) 24, 290
Tsp45I GTSAC 2 cut(s) 715, 1147
TspDTI ATGAA 8 cut(s) 153, 300, 528, 688, 938, 948, 1010, 1142
TspRI CASTG 2 cut(s) 397, 739
Tth111I GACNNNGTC 1 cut(s) 1145
Van91I CCANNNNNTGG 1 cut(s) 506
VspI ATTAAT 2 cut(s) 380, 947
XapI RAATTY 6 cut(s) 43, 157, 245, 539, 777, 999
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmnI GAANNNNTTC 2 cut(s) 519, 1242
XspI CTAG 4 cut(s) 443, 536, 855, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.