Rmu_sc0003047.1_g000001

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003047.1
OG0000388
Physical Location & Seq
Forward (+)
1 .. 433
433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003047.1_g000001.1.cds

Sequence Viewer

Length: 433 bp
tgggaaaaggcctaaacattttactctgttggaggaatggcatcaggagaagcaggagcaagaaaagaagaagaagaaggaaaaacagaaacaagaagaaaaaccagaatctggcccaagcaaatccaaaagagagaacgtgggttctagtttgaatgatgattcttgtttctgggcgcgtgttgaggaagctctcatcttgttgaagaaggaagaactaactactgatgacaagaggaagttgaaagagtttgaggactacgtgtggaatgctctcaagaattatgcagtgtcacctgagattttcttgaagaagagcagttttatgaaatggtggaatgagtataagggaattgttgaaagctcctcattgctcttggacttcatgaaaaatggcggtcccagagagtacgaggcagggaagttcacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

143

Amino Acids

16.98

Weight (kDa)

8.79

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 111
AccII CGCG 1 cut(s) 179
AciI CCGC 1 cut(s) 397
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 262
AgsI TTSAA 5 cut(s) 155, 206, 245, 311, 360
AluBI AGCT 2 cut(s) 192, 364
AluI AGCT 2 cut(s) 192, 364
AlwNI CAGNNNCTG 1 cut(s) 111
AoxI GGCC 2 cut(s) 9, 113
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 114, 399
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 1 cut(s) 399
BfaI CTAG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 399
BmgT120I GGNCC 2 cut(s) 114, 399
BmiI GGNNCC 1 cut(s) 401
BmsI GCATC 1 cut(s) 50
BpuEI CTTGAG 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 289
BseRI GAGGAG 1 cut(s) 356
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 2 cut(s) 11, 115
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 385
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 2 cut(s) 11, 115
BspACI CCGC 1 cut(s) 397
BspANI GGCC 2 cut(s) 11, 115
BspCNI CTCAG 1 cut(s) 290
BspFNI CGCG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 401
BspQI GCTCTTC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 369
Bst6I CTCTTC 1 cut(s) 309
BstBAI YACGTR 1 cut(s) 263
BstDEI CTNAG 2 cut(s) 298, 430
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 179
BstUI CGCG 1 cut(s) 179
BsuRI GGCC 2 cut(s) 11, 115
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 111
CciI TCATGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 114, 399
Csp6I GTAC 1 cut(s) 410
CviAII CATG 1 cut(s) 386
CviJI RGCY 4 cut(s) 11, 115, 192, 364
CviKI_1 RGCY 4 cut(s) 11, 115, 192, 364
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 2 cut(s) 298, 430
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco147I AGGCCT 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 399
FaeI CATG 1 cut(s) 389
FaiI YATR 4 cut(s) 286, 327, 346, 387
FaqI GGGAC 1 cut(s) 385
FatI CATG 1 cut(s) 385
FspBI CTAG 1 cut(s) 148
GlaI GCGC 1 cut(s) 178
HaeIII GGCC 2 cut(s) 11, 115
HhaI GCGC 1 cut(s) 179
Hin1II CATG 1 cut(s) 389
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HinfI GANTC 2 cut(s) 108, 162
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 427
Hpy188III TCNNGA 4 cut(s) 45, 278, 308, 386
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 2 cut(s) 71, 203
HpyCH4IV ACGT 2 cut(s) 139, 262
HpyCH4V TGCA 1 cut(s) 288
HpyF3I CTNAG 2 cut(s) 298, 430
HpySE526I ACGT 2 cut(s) 139, 262
Hsp92II CATG 1 cut(s) 389
HspAI GCGC 1 cut(s) 177
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 2 cut(s) 56, 369
LpnPI CCDG 8 cut(s) 30, 39, 97, 118, 158, 310, 403, 416
LweI GCATC 1 cut(s) 50
MaeI CTAG 1 cut(s) 148
MaeII ACGT 2 cut(s) 139, 262
MaeIII GTNAC 1 cut(s) 292
MboII GAAGA 8 cut(s) 80, 83, 86, 108, 218, 225, 323, 326
MluCI AATT 2 cut(s) 281, 352
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 6 cut(s) 26, 179, 229, 248, 377, 407
Mva1269I GAATGC 1 cut(s) 275
MvnI CGCG 1 cut(s) 179
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 1 cut(s) 401
NmuCI GTSAC 1 cut(s) 292
PagI TCATGA 1 cut(s) 385
PceI AGGCCT 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 309
PctI GAATGC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 108, 162
PflMI CCANNNNNTGG 1 cut(s) 111
Ppu21I YACGTR 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 2 cut(s) 114, 399
PstNI CAGNNNCTG 1 cut(s) 111
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 309
Sau96I GGNCC 2 cut(s) 114, 399
SetI ASST 5 cut(s) 142, 194, 265, 299, 366
SfaNI GCATC 1 cut(s) 50
SinI GGWCC 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 2 cut(s) 281, 352
SseBI AGGCCT 1 cut(s) 11
SsiI CCGC 1 cut(s) 397
SspMI CTAG 1 cut(s) 148
StuI AGGCCT 1 cut(s) 11
TaiI ACGT 2 cut(s) 142, 265
TasI AATT 2 cut(s) 281, 352
TfiI GAWTC 2 cut(s) 108, 162
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 342, 374, 402
TspRI CASTG 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 399
XspI CTAG 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.