Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Reverse (-)

40739679 .. 40745030

Gene Structure 5352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1272300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCCTCCGAAATCTGCAAAATCCAAGGAAGCACCTGCCGAGCGACCCATCCTCGGCCGATTCTCTTCTCACCTCAAGATTGGCATTGTTGGATTGCCGAATGTTGGAAAATCTACTCTGTTTAACACTCTCACAAAGTTGTCCATACCTGCCGAGAACTTCCCTTTCTGCACAATTGAACCCAATGAAGCCCGTGTTAATGTTCCCGATGAGCGATTTGACTGGCTTTGCCAGTTATACAAGCCGAAAAGCGAGGTCTCAGCTTTTCTGGAAATCCATGATATTGCCGGACTTGTTCGGGGTGCCCATGAAGGACAAGGGTTGGGCAACAGTTTCTTATCCCATATCCGTGCAGTTGATGGCATTTTTCACGTTCTGCGTGCATTTGAAGATCCGGATATCATCCATGTTGATGATACTGTGGATCCTGTGAGGGATTTGGAGATTATCAGTGCAGAATTGCGCCTAAAGGACATTGAATTCATTGAGAGGAGGACAGAAGATCTTGAAAAGAGCATGAAGAGGAGCAATGAGAAGGCATTAAAGATTGAGCATGAGTTGTGCCAAAAGATCAAGGCATGGCTTGAGGATGGGAAAGATGTCCGTCTAGGGGAGTGGAAAGCTGCTGAAGTTGAGATCCTGAATCCCTTTCAATTGCTAACAGCCAAGCCTGTTGTTTACTTGGTTAACATGAATGAGAAAGATTACCAGAGGAAAAAGAACAAGTTCTTGCCAAAGATCCATGCGTGGGTGCAGGAACATGGAGCTGAACCAATTATTCCATTCAGCTGTGCATTAGAAAGGAATCTCGCTGATTTGCCACCTGAAGAAGCAGCAAAGTATTGTGAGCAGAACAACGTGCAAAGTGCCCTTACCAAGATCATAAAAACTGGATTTTCAGCGATTAATCTGATATACTTTTTCACCGCTGGACCTGATGAGGTGAAGTGCTGGCAAATTAGGCGGCAGACGAAAGCTCCTCAAGCTGCAGGGGCCATCCATACTGATTTCGAGAGAGGGTTCATTTGTGCTGAGGTCATGAAATTTGATGATCTGAAGGAACTCGGAAGTGAGCCAGCTGTTAAGGCTGCTGGTAAGTACAGACAGGAGGGGAAGACATACGTGGTCCAAGATGCAGATGTCATATTCTTCAAGTTTAATGTTTCTGGGGGCGGGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

395

Amino Acids

44.44

Weight (kDa)

6.4

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	26 - 136	4.4e-20	50S ribosome-binding GTPase
FeoB_N	PF02421	26 - 72	2.7e-07	Ferrous iron transport protein B
YchF-GTPase_C	PF06071	304 - 387	7.8e-38	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	2 cut(s)	43, 157
AccB1I	GGYRCC	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	3 cut(s)	927, 964, 1173
AclWI	GGATC	5 cut(s)	386, 419, 432, 631, 733
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	479, 1043
AcuI	CTGAAG	3 cut(s)	648, 846, 1076
AfaI	GTAC	1 cut(s)	1100
AfiI	CCNNNNNNNGG	4 cut(s)	53, 104, 610, 748
AgsI	TTSAA	6 cut(s)	179, 389, 479, 509, 653, 1153
AluBI	AGCT	7 cut(s)	263, 623, 767, 789, 977, 986, 1079
AluI	AGCT	7 cut(s)	263, 623, 767, 789, 977, 986, 1079
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	5 cut(s)	386, 419, 432, 631, 733
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	2 cut(s)	55, 993
ApeKI	GCWGC	4 cut(s)	623, 833, 986, 1088
ApoI	RAATTY	2 cut(s)	479, 1043
AseI	ATTAAT	1 cut(s)	906
Asp700I	GAANNNNTTC	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	932, 993, 1126
AsuHPI	GGTGA	3 cut(s)	62, 916, 955
AvaII	GGWCC	2 cut(s)	932, 1126
BaeGI	GKGCMC	2 cut(s)	307, 871
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	1121
BbvCI	CCTCAGC	1 cut(s)	1032
BbvI	GCAGC	4 cut(s)	610, 845, 973, 1075
BccI	CCATC	4 cut(s)	56, 353, 584, 1004
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	987
BfuAI	ACCTGC	2 cut(s)	43, 157
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	5 cut(s)	624, 834, 965, 987, 1089
BlsI	GCNGC	5 cut(s)	625, 835, 966, 988, 1090
Bme18I	GGWCC	2 cut(s)	932, 1126
BmgT120I	GGNCC	3 cut(s)	932, 993, 1126
BmiI	GGNNCC	3 cut(s)	304, 426, 994
BmsI	GCATC	1 cut(s)	1123
BpiI	GAAGAC	1 cut(s)	1121
Bpu10I	CCTNAGC	1 cut(s)	1032
BpuEI	CTTGAG	3 cut(s)	59, 605, 966
BsaAI	YACGTR	1 cut(s)	1123
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	24, 52
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	961, 991
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 104, 610, 748
Bse1I	ACTGG	3 cut(s)	227, 232, 895
Bse3DI	GCAATG	1 cut(s)	535
BseAI	TCCGGA	1 cut(s)	394
BseDI	CCNNGG	2 cut(s)	24, 52
BseGI	GGATG	4 cut(s)	48, 402, 595, 996
BseLI	CCNNNNNNNGG	4 cut(s)	53, 104, 610, 748
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	2 cut(s)	273, 1023
BseNI	ACTGG	3 cut(s)	227, 232, 895
BseRI	GAGGAG	3 cut(s)	505, 538, 969
BseSI	GKGCMC	2 cut(s)	307, 871
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	4 cut(s)	610, 845, 973, 1075
BsgI	GTGCAG	4 cut(s)	154, 372, 474, 773
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	57, 995
BshNI	GGYRCC	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	288, 395
BslI	CCNNNNNNNGG	4 cut(s)	53, 104, 610, 748
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	57, 995
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	307, 871
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
BspACI	CCGC	3 cut(s)	927, 964, 1173
BspANI	GGCC	2 cut(s)	57, 995
BspCNI	CTCAG	2 cut(s)	272, 1024
BspEI	TCCGGA	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	1038
BspLI	GGNNCC	3 cut(s)	304, 426, 994
BspMAI	CTGCAG	1 cut(s)	991
BspMI	ACCTGC	2 cut(s)	43, 157
BspPI	GGATC	5 cut(s)	386, 419, 432, 631, 733
BspT107I	GGYRCC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	3 cut(s)	227, 232, 895
BssECI	CCNNGG	2 cut(s)	24, 52
BssMI	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	332, 421
Bst6I	CTCTTC	2 cut(s)	70, 515
BstBAI	YACGTR	1 cut(s)	1123
BstC8I	GCNNGC	3 cut(s)	381, 953, 1077
BstDEI	CTNAG	2 cut(s)	259, 1032
BstF5I	GGATG	4 cut(s)	48, 402, 595, 996
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	8 cut(s)	394, 427, 505, 573, 639, 741, 882, 1054
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	4 cut(s)	961, 983, 992, 1085
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	2 cut(s)	307, 871
BstV1I	GCAGC	4 cut(s)	610, 845, 973, 1075
BstV2I	GAAGAC	1 cut(s)	1121
BstX2I	RGATCY	5 cut(s)	391, 424, 502, 636, 738
BstYI	RGATCY	5 cut(s)	391, 424, 502, 636, 738
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	57, 995
BtsCI	GGATG	4 cut(s)	48, 402, 595, 996
BtsIMutI	CAGTG	1 cut(s)	457
BveI	ACCTGC	2 cut(s)	43, 157
Cac8I	GCNNGC	3 cut(s)	381, 953, 1077
CciI	TCATGA	1 cut(s)	1038
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	932, 993, 1126
Csp6I	GTAC	1 cut(s)	1099
CviQI	GTAC	1 cut(s)	1099
DdeI	CTNAG	2 cut(s)	259, 1032
DpnI	GATC	8 cut(s)	393, 426, 504, 572, 638, 740, 881, 1053
DpnII	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	70, 515
EarI	CTCTTC	2 cut(s)	70, 515
EclXI	CGGCCG	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	932, 1126
Eco52I	CGGCCG	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	648, 846, 1076
EcoRI	GAATTC	1 cut(s)	479
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FauI	CCCGC	1 cut(s)	1166
Fnu4HI	GCNGC	5 cut(s)	624, 834, 965, 987, 1089
FokI	GGATG	4 cut(s)	35, 389, 602, 983
Fsp4HI	GCNGC	5 cut(s)	624, 834, 965, 987, 1089
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	5 cut(s)	624, 834, 965, 987, 1089
HaeIII	GGCC	2 cut(s)	57, 995
HapII	CCGG	2 cut(s)	288, 395
HhaI	GCGC	1 cut(s)	465
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	3 cut(s)	60, 643, 805
HpaI	GTTAAC	1 cut(s)	688
HpaII	CCGG	2 cut(s)	288, 395
HphI	GGTGA	3 cut(s)	62, 916, 955
Hpy166II	GTNNAC	2 cut(s)	679, 688
Hpy188I	TCNGA	4 cut(s)	9, 912, 1056, 1067
Hpy188III	TCNNGA	8 cut(s)	76, 206, 269, 395, 506, 640, 1012, 1039
Hpy8I	GTNNAC	2 cut(s)	679, 688
HpyAV	CCTTC	3 cut(s)	305, 529, 1051
HpyCH4III	ACNGT	2 cut(s)	332, 421
HpyCH4IV	ACGT	3 cut(s)	372, 858, 1122
HpyF10VI	GCNNNNNNNGC	4 cut(s)	961, 983, 992, 1085
HpyF3I	CTNAG	2 cut(s)	259, 1032
HpySE526I	ACGT	3 cut(s)	372, 858, 1122
HspAI	GCGC	1 cut(s)	463
Kpn2I	TCCGGA	1 cut(s)	394
KspAI	GTTAAC	1 cut(s)	688
Kzo9I	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
LmnI	GCTCC	3 cut(s)	525, 764, 982
Lsp1109I	GCAGC	4 cut(s)	610, 845, 973, 1075
LweI	GCATC	1 cut(s)	1123
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	3 cut(s)	372, 858, 1122
MalI	GATC	8 cut(s)	393, 426, 504, 572, 638, 740, 881, 1053
MboI	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
MboII	GAAGA	7 cut(s)	57, 401, 512, 532, 839, 1126, 1141
MfeI	CAATTG	2 cut(s)	174, 653
MflI	RGATCY	5 cut(s)	391, 424, 502, 636, 738
MhlI	GDGCHC	2 cut(s)	307, 871
MluCI	AATT	7 cut(s)	174, 458, 479, 653, 774, 957, 1043
MmeI	TCCRAC	2 cut(s)	70, 85
MroI	TCCGGA	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	7 cut(s)	123, 198, 542, 687, 906, 1083, 1158
MslI	CAYNNNNRTG	2 cut(s)	348, 411
MspA1I	CMGCKG	3 cut(s)	789, 929, 1079
MspI	CCGG	2 cut(s)	288, 395
MunI	CAATTG	2 cut(s)	174, 653
MwoI	GCNNNNNNNGC	4 cut(s)	961, 983, 992, 1085
NdeII	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
NlaIV	GGNNCC	3 cut(s)	304, 426, 994
NmeAIII	GCCGAG	3 cut(s)	33, 64, 178
PagI	TCATGA	1 cut(s)	1038
PaqCI	CACCTGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	3 cut(s)	60, 643, 805
PkrI	GCNGC	5 cut(s)	625, 835, 966, 988, 1090
Ppu21I	YACGTR	1 cut(s)	1123
PshBI	ATTAAT	1 cut(s)	906
PspN4I	GGNNCC	3 cut(s)	304, 426, 994
PspPI	GGNCC	3 cut(s)	932, 993, 1126
PstI	CTGCAG	1 cut(s)	991
PsuI	RGATCY	5 cut(s)	391, 424, 502, 636, 738
PvuII	CAGCTG	2 cut(s)	789, 1079
RsaI	GTAC	1 cut(s)	1100
RsaNI	GTAC	1 cut(s)	1099
RseI	CAYNNNNRTG	2 cut(s)	348, 411
SaqAI	TTAA	7 cut(s)	123, 198, 542, 687, 906, 1083, 1158
SatI	GCNGC	5 cut(s)	624, 834, 965, 987, 1089
Sau3AI	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
Sau96I	GGNCC	3 cut(s)	932, 993, 1126
SduI	GDGCHC	2 cut(s)	307, 871
SfaNI	GCATC	1 cut(s)	1123
SfcI	CTRYAG	1 cut(s)	987
SinI	GGWCC	2 cut(s)	932, 1126
SmiMI	CAYNNNNRTG	2 cut(s)	348, 411
SmlI	CTYRAG	3 cut(s)	74, 584, 981
SmoI	CTYRAG	3 cut(s)	74, 584, 981
Sse9I	AATT	7 cut(s)	174, 458, 479, 653, 774, 957, 1043
SsiI	CCGC	3 cut(s)	927, 964, 1173
SspMI	CTAG	1 cut(s)	608
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	332, 421
TaiI	ACGT	3 cut(s)	375, 861, 1125
TaqI	TCGA	1 cut(s)	1011
TasI	AATT	7 cut(s)	174, 458, 479, 653, 774, 957, 1043
TatI	WGTACW	1 cut(s)	1098
TauI	GCSGC	1 cut(s)	967
TfiI	GAWTC	3 cut(s)	60, 643, 805
Tru1I	TTAA	7 cut(s)	123, 198, 542, 687, 906, 1083, 1158
Tru9I	TTAA	7 cut(s)	123, 198, 542, 687, 906, 1083, 1158
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	4 cut(s)	623, 833, 986, 1088
TspDTI	ATGAA	7 cut(s)	201, 324, 472, 533, 707, 1012, 1055
TspGWI	ACGGA	2 cut(s)	338, 593
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	2 cut(s)	932, 1126
VspI	ATTAAT	1 cut(s)	906
XapI	RAATTY	2 cut(s)	479, 1043
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.