Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Reverse (-)

37695552 .. 37738137

Gene Structure 42586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG301600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTGGCGAGAATCTTTGCGCTCCAATCTGTGGGAGTGGCGGAGATAGTCGTCGTGCGTCGTTTTGCAGATGCATTGATGGAAGAAAGTCAGGCCTTGGTGAATGCAGAGCATGCCAGCAAGAACTGGTTCCCTTGGCTGGGTTTGAGTGTTCGCAGGCACGAGTGCAAACAATTTCTTGCTGGTCTACTTGAGCGCGGCAGACTTACACATCAACAATTAATGGACAGAGCCAATCAGAAATCCAAATCAAATAGCAGTCAAGTTCAGAATGCTGCTCAAGATAACTTTGTTAGACTTCCTCAATATGATTCATTGCAAGGGGCATGGGAATGGGCACGTAAGACCTTAATGGACCATGCTTCGGATAAGCGAGAACATATTTACACGAGGGAGCAATTGGAGAAGGCACAAACTGCTGATCCTGAGCTACTGCATCAGTTTTTCATAGCAAACATTGGAAACTTAACTCAAAAGATTGATGATGCTGAAGCAGAACCTATGCTAGATGGTGTGTATGTGGCCTATTTGGAATGTTGCATAGATGAGTTTTTGGGTTGTTTATGGACTTTTCTTCAGATGGGAGAGTTATCAAGCGGACACCTCCATCGATCTAAGCAAGCACCATATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000719 GO:0003674 GO:0003824 GO:0003904 GO:0003913 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051716 GO:0071704 GO:0071949 GO:0090304 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_photolyase

Protein Analysis

211

Amino Acids

24.12

Weight (kDa)

5.9

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	187
AccII	CGCG	1 cut(s)	198
AciI	CCGC	3 cut(s)	41, 198, 597
AclWI	GGATC	1 cut(s)	416
AcuI	CTGAAG	2 cut(s)	510, 560
AfiI	CCNNNNNNNGG	4 cut(s)	31, 139, 140, 364
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
AlwI	GGATC	1 cut(s)	416
AoxI	GGCC	2 cut(s)	93, 522
ApeKI	GCWGC	1 cut(s)	275
AseI	ATTAAT	1 cut(s)	221
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	22, 198
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	340
BauI	CACGAG	2 cut(s)	161, 388
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	4 cut(s)	73, 503, 574, 615
BfaI	CTAG	2 cut(s)	506, 634
BisI	GCNGC	2 cut(s)	199, 276
BlsI	GCNGC	2 cut(s)	200, 277
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	3 cut(s)	61, 445, 475
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	2 cut(s)	212, 264
Bsa29I	ATCGAT	1 cut(s)	610
BsaAI	YACGTR	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	96, 134
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 139, 140, 364
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	314
BseCI	ATCGAT	1 cut(s)	610
BseDI	CCNNGG	2 cut(s)	96, 134
BseLI	CCNNNNNNNGG	4 cut(s)	31, 139, 140, 364
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	95, 524
BshVI	ATCGAT	1 cut(s)	610
BslI	CCNNNNNNNGG	4 cut(s)	31, 139, 140, 364
BsmI	GAATGC	2 cut(s)	109, 277
BsnI	GGCC	2 cut(s)	95, 524
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	421, 611
BspACI	CCGC	3 cut(s)	41, 198, 597
BspANI	GGCC	2 cut(s)	95, 524
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	96, 134
BssMI	GATC	2 cut(s)	421, 611
BssSI	CACGAG	2 cut(s)	161, 388
BssT1I	CCWWGG	2 cut(s)	96, 134
Bst2BI	CACGAG	2 cut(s)	161, 388
BstAPI	GCANNNNNTGC	3 cut(s)	113, 416, 629
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	4 cut(s)	114, 118, 158, 621
BstDEI	CTNAG	2 cut(s)	426, 615
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	2 cut(s)	22, 198
BstKTI	GATC	2 cut(s)	424, 614
BstMBI	GATC	2 cut(s)	421, 611
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 416, 629
BstNSI	RCATGY	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	610
BsuRI	GGCC	2 cut(s)	95, 524
BsuTUI	ATCGAT	1 cut(s)	610
Cac8I	GCNNGC	4 cut(s)	114, 118, 158, 621
CfoI	GCGC	2 cut(s)	22, 198
Cfr13I	GGNCC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	610
CseI	GACGC	1 cut(s)	47
CviAII	CATG	3 cut(s)	113, 327, 359
CviJI	RGCY	5 cut(s)	95, 139, 233, 430, 524
CviKI_1	RGCY	5 cut(s)	95, 139, 233, 430, 524
DdeI	CTNAG	2 cut(s)	426, 615
DpnI	GATC	2 cut(s)	423, 613
DpnII	GATC	2 cut(s)	421, 611
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	96, 134
Eco147I	AGGCCT	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	510, 560
EcoT14I	CCWWGG	2 cut(s)	96, 134
EcoT22I	ATGCAT	1 cut(s)	76
ErhI	CCWWGG	2 cut(s)	96, 134
FaeI	CATG	3 cut(s)	116, 330, 362
FatI	CATG	3 cut(s)	112, 326, 358
FauNDI	CATATG	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	199, 276
Fsp4HI	GCNGC	2 cut(s)	199, 276
FspBI	CTAG	2 cut(s)	506, 634
GlaI	GCGC	2 cut(s)	21, 197
GluI	GCNGC	2 cut(s)	199, 276
GsaI	CCCAGC	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	95, 524
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	22, 198
Hin1II	CATG	3 cut(s)	116, 330, 362
Hin6I	GCGC	2 cut(s)	20, 196
HinP1I	GCGC	2 cut(s)	20, 196
HinfI	GANTC	2 cut(s)	12, 311
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	4 cut(s)	240, 270, 367, 579
Hpy188III	TCNNGA	2 cut(s)	281, 425
Hpy8I	GTNNAC	1 cut(s)	188
Hpy99I	CGWCG	2 cut(s)	56, 63
HpyAV	CCTTC	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	7 cut(s)	68, 74, 107, 168, 319, 436, 540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 416, 629
HpyF3I	CTNAG	2 cut(s)	426, 615
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	3 cut(s)	116, 330, 362
HspAI	GCGC	2 cut(s)	20, 196
Kzo9I	GATC	2 cut(s)	421, 611
LmnI	GCTCC	2 cut(s)	27, 394
LpnPI	CCDG	7 cut(s)	77, 112, 125, 130, 142, 168, 438
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	3 cut(s)	61, 445, 475
MaeI	CTAG	2 cut(s)	506, 634
MaeII	ACGT	1 cut(s)	340
MalI	GATC	2 cut(s)	423, 613
MboI	GATC	2 cut(s)	421, 611
MboII	GAAGA	2 cut(s)	95, 566
MfeI	CAATTG	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	3 cut(s)	173, 218, 398
MnlI	CCTC	3 cut(s)	312, 384, 614
Mph1103I	ATGCAT	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	3 cut(s)	221, 350, 467
MslI	CAYNNNNRTG	1 cut(s)	331
MunI	CAATTG	1 cut(s)	398
Mva1269I	GAATGC	2 cut(s)	109, 277
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	113, 416, 629
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	2 cut(s)	421, 611
NlaIII	CATG	3 cut(s)	116, 330, 362
NlaIV	GGNNCC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	76
NspI	RCATGY	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	116
PceI	AGGCCT	1 cut(s)	95
PctI	GAATGC	2 cut(s)	109, 277
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	12, 311
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	200, 277
Ppu21I	YACGTR	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	221, 350, 467
SatI	GCNGC	2 cut(s)	199, 276
Sau3AI	GATC	2 cut(s)	421, 611
Sau96I	GGNCC	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	5 cut(s)	343, 350, 432, 502, 606
SfaNI	GCATC	3 cut(s)	61, 445, 475
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	331
SmlI	CTYRAG	2 cut(s)	191, 279
SmoI	CTYRAG	2 cut(s)	191, 279
SphI	GCATGC	1 cut(s)	116
Sse9I	AATT	3 cut(s)	173, 218, 398
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	3 cut(s)	41, 198, 597
SspMI	CTAG	2 cut(s)	506, 634
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	2 cut(s)	96, 134
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	610
TasI	AATT	3 cut(s)	173, 218, 398
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	12, 311
Tru1I	TTAA	3 cut(s)	221, 350, 467
Tru9I	TTAA	3 cut(s)	221, 350, 467
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	303, 436
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	355
VspI	ATTAAT	1 cut(s)	221
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	2 cut(s)	506, 634
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.