photo-lyase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G30580 |
| fragaria_vesca | FvH4_3g10200 |
| malus_domestica | MD05G1272300.v1.1 MD10G1252400.v1.1 |
| prunus_persica | Prupe.4G091100_v2.0.a1 |
| pyrus_communis | pycom05g25420 pycom10g20820 |
| rosa_chinensis | RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421 |
| rosa_laevigata | RLG00000032248 |
| rosa_multiflora | Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750 |
| rosa_rugosa | Rorug04G0049400 Rorug05G0032000 Rorug05G0032100 |
| rosa_samantha | Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900 |
| rosa_wichuraiana | Rw5G010890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 176 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 124 |
| AlwI | GGATC | 1 cut(s) | 176 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| AspS9I | GGNCC | 1 cut(s) | 115 |
| AvaII | GGWCC | 1 cut(s) | 115 |
| BaeGI | GKGCMC | 1 cut(s) | 100 |
| BauI | CACGAG | 1 cut(s) | 148 |
| BccI | CCATC | 1 cut(s) | 205 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| Bme18I | GGWCC | 1 cut(s) | 115 |
| BmgT120I | GGNCC | 1 cut(s) | 115 |
| BmsI | GCATC | 1 cut(s) | 219 |
| BsaAI | YACGTR | 1 cut(s) | 101 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 124 |
| Bse3DI | GCAATG | 1 cut(s) | 74 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 124 |
| BseMI | GCAATG | 1 cut(s) | 74 |
| BseSI | GKGCMC | 1 cut(s) | 100 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 124 |
| BsmI | GAATGC | 1 cut(s) | 199 |
| Bsp1286I | GDGCHC | 1 cut(s) | 100 |
| Bsp143I | GATC | 1 cut(s) | 181 |
| BspPI | GGATC | 1 cut(s) | 176 |
| BsrDI | GCAATG | 1 cut(s) | 74 |
| BssMI | GATC | 1 cut(s) | 181 |
| BssSI | CACGAG | 1 cut(s) | 148 |
| Bst2BI | CACGAG | 1 cut(s) | 148 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 176 |
| BstBAI | YACGTR | 1 cut(s) | 101 |
| BstDEI | CTNAG | 1 cut(s) | 28 |
| BstKTI | GATC | 1 cut(s) | 184 |
| BstMBI | GATC | 1 cut(s) | 181 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 176 |
| BstSLI | GKGCMC | 1 cut(s) | 100 |
| Cfr13I | GGNCC | 1 cut(s) | 115 |
| CviAII | CATG | 3 cut(s) | 87, 119, 233 |
| CviJI | RGCY | 1 cut(s) | 61 |
| CviKI_1 | RGCY | 1 cut(s) | 61 |
| DdeI | CTNAG | 1 cut(s) | 28 |
| DpnI | GATC | 1 cut(s) | 183 |
| DpnII | GATC | 1 cut(s) | 181 |
| Eco47I | GGWCC | 1 cut(s) | 115 |
| EcoT22I | ATGCAT | 2 cut(s) | 234, 246 |
| FaeI | CATG | 3 cut(s) | 90, 122, 236 |
| FaiI | YATR | 6 cut(s) | 69, 88, 120, 141, 234, 242 |
| FatI | CATG | 3 cut(s) | 86, 118, 232 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 5 |
| Hin1II | CATG | 3 cut(s) | 90, 122, 236 |
| HinfI | GANTC | 1 cut(s) | 71 |
| Hpy188I | TCNGA | 1 cut(s) | 127 |
| Hpy188III | TCNNGA | 2 cut(s) | 10, 190 |
| HpyAV | CCTTC | 1 cut(s) | 160 |
| HpyCH4IV | ACGT | 1 cut(s) | 100 |
| HpyCH4V | TGCA | 3 cut(s) | 79, 232, 244 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 176 |
| HpyF3I | CTNAG | 1 cut(s) | 28 |
| HpySE526I | ACGT | 1 cut(s) | 100 |
| Hsp92II | CATG | 3 cut(s) | 90, 122, 236 |
| Kzo9I | GATC | 1 cut(s) | 181 |
| LmnI | GCTCC | 1 cut(s) | 154 |
| LpnPI | CCDG | 2 cut(s) | 71, 175 |
| LweI | GCATC | 1 cut(s) | 219 |
| MaeII | ACGT | 1 cut(s) | 100 |
| MalI | GATC | 1 cut(s) | 183 |
| MboI | GATC | 1 cut(s) | 181 |
| MboII | GAAGA | 1 cut(s) | 238 |
| MfeI | CAATTG | 1 cut(s) | 158 |
| MhlI | GDGCHC | 1 cut(s) | 100 |
| MluCI | AATT | 1 cut(s) | 158 |
| MnlI | CCTC | 4 cut(s) | 72, 144, 195, 208 |
| Mph1103I | ATGCAT | 2 cut(s) | 234, 246 |
| MseI | TTAA | 2 cut(s) | 110, 247 |
| MslI | CAYNNNNRTG | 1 cut(s) | 91 |
| MunI | CAATTG | 1 cut(s) | 158 |
| Mva1269I | GAATGC | 1 cut(s) | 199 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 176 |
| NdeII | GATC | 1 cut(s) | 181 |
| NlaIII | CATG | 3 cut(s) | 90, 122, 236 |
| NsiI | ATGCAT | 2 cut(s) | 234, 246 |
| PctI | GAATGC | 1 cut(s) | 199 |
| PfeI | GAWTC | 1 cut(s) | 71 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| Ppu21I | YACGTR | 1 cut(s) | 101 |
| PspPI | GGNCC | 1 cut(s) | 115 |
| RseI | CAYNNNNRTG | 1 cut(s) | 91 |
| SaqAI | TTAA | 2 cut(s) | 110, 247 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 1 cut(s) | 181 |
| Sau96I | GGNCC | 1 cut(s) | 115 |
| SduI | GDGCHC | 1 cut(s) | 100 |
| SetI | ASST | 2 cut(s) | 103, 110 |
| SfaNI | GCATC | 1 cut(s) | 219 |
| SinI | GGWCC | 1 cut(s) | 115 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 91 |
| SmlI | CTYRAG | 1 cut(s) | 8 |
| SmoI | CTYRAG | 1 cut(s) | 8 |
| Sse9I | AATT | 1 cut(s) | 158 |
| TaiI | ACGT | 1 cut(s) | 103 |
| TasI | AATT | 1 cut(s) | 158 |
| TfiI | GAWTC | 1 cut(s) | 71 |
| Tru1I | TTAA | 2 cut(s) | 110, 247 |
| Tru9I | TTAA | 2 cut(s) | 110, 247 |
| TseI | GCWGC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 2 cut(s) | 63, 206 |
| VpaK11BI | GGWCC | 1 cut(s) | 115 |
| Zsp2I | ATGCAT | 2 cut(s) | 234, 246 |