Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

11899788 .. 11911364

Gene Structure 11577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG139900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATCTTGGATCTACAGCTCAAGGCATGGCTTGAGGATGGAAAAGATATCCGTCTAGGGGACTGGAAAGCTGCTGATGTCGAGATCCTGAATACCTTTCAATTGCTAACAGCTAAGCCTGTTGTTTACTTGGTGAAATGCTGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGGACTCTTATGAGTATCTATTTAAAGAGCTGAGCAAAATTATCTGCAGAGAACTTGCTGACAACTACTACTTTTACCAGCCTCAATATGATTCATTGCAAGGGGCATGGGAATGGGCACGTAAGACCTTAATGGACCATGCTTCGGATAAGCGAGAACATATTTACACGAGGGAGCAATTGGAGAAGGCACAAACTGCTGATCCTCTCTGGAATGCCTCCCAATGTGAGATGGTTCATTATGGGAAGATGCATGATACTTGGATTTACAATGCTCAGGAGCTACTGCATCAGATTTTCATAGCAAACATTGGAAACTTAACTCAAAAGATTGATGATGCTGAAGCAGAACCTATGCTAGATGGGTCTTCTAGTATTGAATATAGATTCATTATGTGCCCGGAGTTCATGAACTTGGAGCCTGGATCAACGTATTCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000719 GO:0003674 GO:0003824 GO:0003904 GO:0003913 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051716 GO:0071704 GO:0071949 GO:0090304 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_photolyase

Protein Analysis

221

Amino Acids

25.84

Weight (kDa)

4.92

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YchF-GTPase_C	PF06071	45 - 75	5e-11	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	4 cut(s)	18, 79, 419, 655
AcuI	CTGAAG	1 cut(s)	585
AfiI	CCNNNNNNNGG	2 cut(s)	58, 367
AgsI	TTSAA	3 cut(s)	101, 162, 602
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	6 cut(s)	19, 71, 113, 176, 253, 505
AluI	AGCT	6 cut(s)	19, 71, 113, 176, 253, 505
AlwI	GGATC	4 cut(s)	18, 79, 419, 655
ApeKI	GCWGC	2 cut(s)	71, 176
AspS9I	GGNCC	2 cut(s)	183, 358
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	2 cut(s)	183, 358
BaeGI	GKGCMC	2 cut(s)	343, 623
BauI	CACGAG	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	58, 163
BccI	CCATC	4 cut(s)	32, 194, 448, 578
BciT130I	CCWGG	1 cut(s)	645
BcnI	CCSGG	1 cut(s)	623
BfaI	CTAG	3 cut(s)	56, 581, 594
BfmI	CTRYAG	3 cut(s)	14, 177, 268
BisI	GCNGC	3 cut(s)	72, 155, 177
BlpI	GCTNAGC	2 cut(s)	114, 254
BlsI	GCNGC	3 cut(s)	73, 156, 178
Bme1390I	CCNGG	2 cut(s)	623, 645
Bme18I	GGWCC	2 cut(s)	183, 358
BmgT120I	GGNCC	2 cut(s)	183, 358
BmiI	GGNNCC	3 cut(s)	168, 184, 642
BmrFI	CCNGG	2 cut(s)	623, 645
BmsI	GCATC	3 cut(s)	462, 520, 550
BpiI	GAAGAC	1 cut(s)	582
Bpu10I	CCTNAGC	2 cut(s)	222, 498
Bpu1102I	GCTNAGC	2 cut(s)	114, 254
BpuEI	CTTGAG	3 cut(s)	5, 53, 156
BpuMI	CCSGG	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 367
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	645
BseGI	GGATG	2 cut(s)	43, 186
BseLI	CCNNNNNNNGG	2 cut(s)	58, 367
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	3 cut(s)	213, 245, 512
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	159
BseSI	GKGCMC	2 cut(s)	343, 623
BseXI	GCAGC	2 cut(s)	58, 163
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	2 cut(s)	74, 196
BslI	CCNNNNNNNGG	2 cut(s)	58, 367
BsmFI	GGGAC	2 cut(s)	74, 196
BsmI	GAATGC	1 cut(s)	442
Bsp1286I	GDGCHC	2 cut(s)	343, 623
Bsp143I	GATC	5 cut(s)	3, 10, 84, 424, 647
Bsp1720I	GCTNAGC	2 cut(s)	114, 254
BspACI	CCGC	1 cut(s)	154
BspCNI	CTCAG	3 cut(s)	214, 246, 511
BspHI	TCATGA	1 cut(s)	630
BspLI	GGNNCC	3 cut(s)	168, 184, 642
BspMAI	CTGCAG	2 cut(s)	181, 272
BspPI	GGATC	4 cut(s)	18, 79, 419, 655
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	68
BssMI	GATC	5 cut(s)	3, 10, 84, 424, 647
BssSI	CACGAG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	4 cut(s)	114, 222, 254, 498
BstF5I	GGATG	2 cut(s)	43, 186
BstKTI	GATC	5 cut(s)	6, 13, 87, 427, 650
BstMBI	GATC	5 cut(s)	3, 10, 84, 424, 647
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 173, 419
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	2 cut(s)	621, 643
BstSFI	CTRYAG	3 cut(s)	14, 177, 268
BstSLI	GKGCMC	2 cut(s)	343, 623
BstV1I	GCAGC	2 cut(s)	58, 163
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	2 cut(s)	10, 84
BstYI	RGATCY	2 cut(s)	10, 84
BtsCI	GGATG	2 cut(s)	43, 186
Cac8I	GCNNGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	630
Cfr13I	GGNCC	2 cut(s)	183, 358
CviAII	CATG	5 cut(s)	27, 330, 362, 476, 631
DdeI	CTNAG	4 cut(s)	114, 222, 254, 498
DpnI	GATC	5 cut(s)	5, 12, 86, 426, 649
DpnII	GATC	5 cut(s)	3, 10, 84, 424, 647
DraI	TTTAAA	1 cut(s)	247
Eco32I	GATATC	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	183, 358
Eco57I	CTGAAG	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	643
EcoRV	GATATC	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	477
FaeI	CATG	5 cut(s)	30, 333, 365, 479, 634
FaqI	GGGAC	2 cut(s)	74, 196
FatI	CATG	5 cut(s)	26, 329, 361, 475, 630
Fnu4HI	GCNGC	3 cut(s)	72, 155, 177
FokI	GGATG	2 cut(s)	50, 173
Fsp4HI	GCNGC	3 cut(s)	72, 155, 177
FspBI	CTAG	3 cut(s)	56, 581, 594
GluI	GCNGC	3 cut(s)	72, 155, 177
HapII	CCGG	1 cut(s)	623
Hin1II	CATG	5 cut(s)	30, 333, 365, 479, 634
HinfI	GANTC	4 cut(s)	210, 227, 314, 609
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	370, 516
Hpy188III	TCNNGA	5 cut(s)	82, 88, 433, 500, 631
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	343, 653
HpyCH4V	TGCA	5 cut(s)	179, 270, 322, 475, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 173, 419
HpyF3I	CTNAG	4 cut(s)	114, 222, 254, 498
HpySE526I	ACGT	2 cut(s)	343, 653
Hsp92II	CATG	5 cut(s)	30, 333, 365, 479, 634
Kzo9I	GATC	5 cut(s)	3, 10, 84, 424, 647
LmnI	GCTCC	4 cut(s)	172, 397, 502, 640
Lsp1109I	GCAGC	2 cut(s)	58, 163
LweI	GCATC	3 cut(s)	462, 520, 550
MaeI	CTAG	3 cut(s)	56, 581, 594
MaeII	ACGT	2 cut(s)	343, 653
MalI	GATC	5 cut(s)	5, 12, 86, 426, 649
MboI	GATC	5 cut(s)	3, 10, 84, 424, 647
MboII	GAAGA	2 cut(s)	481, 582
MfeI	CAATTG	2 cut(s)	101, 401
MflI	RGATCY	2 cut(s)	10, 84
MhlI	GDGCHC	2 cut(s)	343, 623
MluCI	AATT	4 cut(s)	101, 147, 261, 401
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	8 cut(s)	28, 180, 200, 217, 315, 387, 438, 451
Mph1103I	ATGCAT	1 cut(s)	477
MseI	TTAA	4 cut(s)	246, 353, 542, 664
MslI	CAYNNNNRTG	1 cut(s)	334
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	2 cut(s)	623, 645
MunI	CAATTG	2 cut(s)	101, 401
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	3 cut(s)	151, 173, 419
NciI	CCSGG	1 cut(s)	623
NdeII	GATC	5 cut(s)	3, 10, 84, 424, 647
NlaIII	CATG	5 cut(s)	30, 333, 365, 479, 634
NlaIV	GGNNCC	3 cut(s)	168, 184, 642
NsiI	ATGCAT	1 cut(s)	477
PagI	TCATGA	1 cut(s)	630
PctI	GAATGC	1 cut(s)	442
PfeI	GAWTC	3 cut(s)	210, 314, 609
PkrI	GCNGC	3 cut(s)	73, 156, 178
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	3 cut(s)	168, 184, 642
PspPI	GGNCC	2 cut(s)	183, 358
PstI	CTGCAG	2 cut(s)	181, 272
PsuI	RGATCY	2 cut(s)	10, 84
RseI	CAYNNNNRTG	1 cut(s)	334
SaqAI	TTAA	4 cut(s)	246, 353, 542, 664
SatI	GCNGC	3 cut(s)	72, 155, 177
Sau3AI	GATC	5 cut(s)	3, 10, 84, 424, 647
Sau96I	GGNCC	2 cut(s)	183, 358
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	623, 645
SduI	GDGCHC	2 cut(s)	343, 623
SfaNI	GCATC	3 cut(s)	462, 520, 550
SfcI	CTRYAG	3 cut(s)	14, 177, 268
SinI	GGWCC	2 cut(s)	183, 358
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	3 cut(s)	20, 32, 171
SmoI	CTYRAG	3 cut(s)	20, 32, 171
Sse9I	AATT	4 cut(s)	101, 147, 261, 401
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	3 cut(s)	56, 581, 594
StyD4I	CCNGG	2 cut(s)	621, 643
TaiI	ACGT	2 cut(s)	346, 656
TaqI	TCGA	1 cut(s)	81
TasI	AATT	4 cut(s)	101, 147, 261, 401
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	3 cut(s)	210, 314, 609
Tru1I	TTAA	4 cut(s)	246, 353, 542, 664
Tru9I	TTAA	4 cut(s)	246, 353, 542, 664
TseI	GCWGC	2 cut(s)	71, 176
TspDTI	ATGAA	7 cut(s)	202, 306, 449, 511, 601, 619, 647
TspGWI	ACGGA	1 cut(s)	41
VpaK11BI	GGWCC	2 cut(s)	183, 358
XspI	CTAG	3 cut(s)	56, 581, 594
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.