Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

77224436 .. 77227729

Gene Structure 3294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAAGGGGGTTTGTCAATCGGGAGAGGCATTCAATGCTTCAACTTGCAACAGATATACTATAAGTCCGGTTATGAAGCCGAGGAAGATTCAGCGGACACGGTGGCATTCAGTTCTCCAAGGACGGTGCGGTCATGGCAGCCACACGCCTCTATAGCTGCTGGTCGTTATGTGTCAAACATGACTTATAAGGGCTGCAGCCACCTTTGCTCAAGGCATGGCTTCGAGGATGGAAAAGATATCCGTCTAGGGGACCGGAAAGCTGCTGATGTCGAGATCCCGAATACCTTTCAATTGCTAACAGCTAAGCTCGTTGTTTACTTGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

133

Amino Acids

14.69

Weight (kDa)

8.38

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AasI	GACNNNNNNGTC	1 cut(s)	130
AciI	CCGC	3 cut(s)	95, 130, 326
AclWI	GGATC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	4 cut(s)	35, 43, 293, 334
AluBI	AGCT	5 cut(s)	158, 263, 305, 310, 348
AluI	AGCT	5 cut(s)	158, 263, 305, 310, 348
AlwI	GGATC	1 cut(s)	271
ApeKI	GCWGC	6 cut(s)	139, 158, 195, 198, 263, 348
AspS9I	GGNCC	2 cut(s)	253, 356
AvaII	GGWCC	2 cut(s)	253, 356
BbvCI	CCTCAGC	1 cut(s)	395
BbvI	GCAGC	6 cut(s)	145, 151, 182, 210, 250, 335
BccI	CCATC	2 cut(s)	224, 367
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	3 cut(s)	153, 196, 349
BisI	GCNGC	7 cut(s)	140, 159, 196, 199, 264, 327, 349
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	7 cut(s)	141, 160, 197, 200, 265, 328, 350
Bme18I	GGWCC	2 cut(s)	253, 356
BmgT120I	GGNCC	2 cut(s)	253, 356
BmiI	GGNNCC	3 cut(s)	254, 340, 357
Bpu10I	CCTNAGC	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	196, 328
BsaJI	CCNNGG	2 cut(s)	81, 119
BsaWI	WCCGGW	2 cut(s)	68, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	81, 119
BseGI	GGATG	2 cut(s)	235, 359
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	6 cut(s)	145, 151, 182, 210, 250, 335
BsiSI	CCGG	2 cut(s)	69, 256
BslFI	GGGAC	2 cut(s)	266, 369
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	266, 369
BsmI	GAATGC	2 cut(s)	30, 107
Bsp143I	GATC	1 cut(s)	276
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	3 cut(s)	95, 130, 326
BspCNI	CTCAG	1 cut(s)	387
BspLI	GGNNCC	3 cut(s)	254, 340, 357
BspMAI	CTGCAG	2 cut(s)	200, 353
BspPI	GGATC	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	81, 119
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	103, 127
BstAPI	GCANNNNNTGC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	306, 395
BstF5I	GGATG	2 cut(s)	235, 359
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 136, 155, 207, 345
BstSFI	CTRYAG	3 cut(s)	153, 196, 349
BstV1I	GCAGC	6 cut(s)	145, 151, 182, 210, 250, 335
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	235, 359
Cfr13I	GGNCC	2 cut(s)	253, 356
CviAII	CATG	3 cut(s)	135, 181, 218
DdeI	CTNAG	2 cut(s)	306, 395
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	253, 356
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	3 cut(s)	138, 184, 221
FaqI	GGGAC	2 cut(s)	266, 369
FatI	CATG	3 cut(s)	134, 180, 217
Fnu4HI	GCNGC	7 cut(s)	140, 159, 196, 199, 264, 327, 349
FokI	GGATG	2 cut(s)	242, 346
Fsp4HI	GCNGC	7 cut(s)	140, 159, 196, 199, 264, 327, 349
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	7 cut(s)	140, 159, 196, 199, 264, 327, 349
HapII	CCGG	2 cut(s)	69, 256
Hin1II	CATG	3 cut(s)	138, 184, 221
HinfI	GANTC	2 cut(s)	89, 383
HpaII	CCGG	2 cut(s)	69, 256
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188III	TCNNGA	3 cut(s)	22, 274, 280
Hpy8I	GTNNAC	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	103, 127
HpyCH4V	TGCA	3 cut(s)	49, 198, 351
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 136, 155, 207, 345
HpyF3I	CTNAG	2 cut(s)	306, 395
Hsp92II	CATG	3 cut(s)	138, 184, 221
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	4 cut(s)	82, 147, 269, 337
Lsp1109I	GCAGC	6 cut(s)	145, 151, 182, 210, 250, 335
MaeI	CTAG	1 cut(s)	248
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	98
MfeI	CAATTG	1 cut(s)	293
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	1 cut(s)	293
MnlI	CCTC	7 cut(s)	20, 76, 160, 220, 352, 373, 390
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	2 cut(s)	69, 256
MunI	CAATTG	1 cut(s)	293
Mva1269I	GAATGC	2 cut(s)	30, 107
MwoI	GCNNNNNNNGC	5 cut(s)	36, 136, 155, 207, 345
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	3 cut(s)	138, 184, 221
NlaIV	GGNNCC	3 cut(s)	254, 340, 357
NmeAIII	GCCGAG	1 cut(s)	106
PctI	GAATGC	2 cut(s)	30, 107
PfeI	GAWTC	2 cut(s)	89, 383
PkrI	GCNGC	7 cut(s)	141, 160, 197, 200, 265, 328, 350
PsiI	TTATAA	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	254, 340, 357
PspPI	GGNCC	2 cut(s)	253, 356
PstI	CTGCAG	2 cut(s)	200, 353
PsuI	RGATCY	1 cut(s)	276
SatI	GCNGC	7 cut(s)	140, 159, 196, 199, 264, 327, 349
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	2 cut(s)	253, 356
SetI	ASST	8 cut(s)	160, 207, 265, 290, 307, 312, 350, 401
SfcI	CTRYAG	3 cut(s)	153, 196, 349
SinI	GGWCC	2 cut(s)	253, 356
SmlI	CTYRAG	2 cut(s)	211, 343
SmoI	CTYRAG	2 cut(s)	211, 343
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	3 cut(s)	95, 130, 326
SspMI	CTAG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	2 cut(s)	103, 127
TaqI	TCGA	2 cut(s)	225, 273
TasI	AATT	1 cut(s)	293
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	89, 383
TseI	GCWGC	6 cut(s)	139, 158, 195, 198, 263, 348
TspDTI	ATGAA	2 cut(s)	90, 375
TspGWI	ACGGA	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	253, 356
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.