Rroxscaffold_5G00346700
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
17665012 .. 17667841
2830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346700.1

Sequence Viewer

Length: 291 bp
ATGAATTTCATTCTCATTCTCTACAAGAAATTGCTAATAGTTTTCTCTTCTCGAGTTGCTTGGCACCTAGATGCGATCACAACGATTACAGGAATAGTCGATTGTGCAGGACTGAAGGTTGACCTAACAACATATGTGGAGAAACACAAGTTTATTTCTGATGTAGTGCTGAATGAGAAAGTGTCTAATGATGAGTGTGTGGGACACGCTGTTAAATTATGCAACTTTTCACGAGAATTTCCGGGTACGGTTGGGAATCGTACTCGTGTTACTTATGGGGAAGCCTTATAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

7.74

Isoelectric Point (pI)

10.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AcsI RAATTY 2 cut(s) 4, 236
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 2 cut(s) 247, 262
Ama87I CYCGRG 1 cut(s) 51
ApoI RAATTY 2 cut(s) 4, 236
AsuC2I CCSGG 1 cut(s) 243
AvaI CYCGRG 1 cut(s) 51
BanI GGYRCC 1 cut(s) 63
BauI CACGAG 2 cut(s) 231, 264
BcnI CCSGG 1 cut(s) 243
BfaI CTAG 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 243
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 243
BsgI GTGCAG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 51
Bsp143I GATC 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 63
BssMI GATC 1 cut(s) 75
BssSI CACGAG 2 cut(s) 231, 264
Bst2BI CACGAG 2 cut(s) 231, 264
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 52
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 241
Csp6I GTAC 2 cut(s) 246, 261
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviJI RGCY 1 cut(s) 284
CviKI_1 RGCY 1 cut(s) 284
CviQI GTAC 2 cut(s) 246, 261
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 51
FaiI YATR 5 cut(s) 133, 135, 220, 276, 289
FaqI GGGAC 1 cut(s) 216
FauNDI CATATG 1 cut(s) 133
FspBI CTAG 1 cut(s) 68
HapII CCGG 1 cut(s) 242
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 51, 231
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 107, 222
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 3 cut(s) 75, 93, 255
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 268
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 1 cut(s) 39
MluCI AATT 4 cut(s) 4, 29, 215, 236
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 69
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 243
NciI CCSGG 1 cut(s) 243
NdeI CATATG 1 cut(s) 133
NdeII GATC 1 cut(s) 75
NlaIV GGNNCC 1 cut(s) 65
PaeR7I CTCGAG 1 cut(s) 51
PfeI GAWTC 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 65
RsaI GTAC 2 cut(s) 247, 262
RsaNI GTAC 2 cut(s) 246, 261
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 213
Sau3AI GATC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 243
SetI ASST 3 cut(s) 69, 120, 126
SfaNI GCATC 1 cut(s) 61
Sfr274I CTCGAG 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 4 cut(s) 4, 29, 215, 236
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 52, 99
TasI AATT 4 cut(s) 4, 29, 215, 236
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 4, 236
XhoI CTCGAG 1 cut(s) 51
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.