Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

41346336 .. 41349390

Gene Structure 3055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG190100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGCCACCGCGTCGCCCTTGGATTCTCCGAAGATCGACTCCGAAGCCGCCGACACGGAGCCAAACCCTAACCCTAATCCTTCAAAAGCATTGTTCCCTGGGCTTTCACAGCATTATTTGCAGATGCAGTTGTATTCACAGTTGTATTGGCCATCATGTCTTCGCTTTCTGGTTTTCTTTGGCCTCATTGTAGTTGGAGGTGCCAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

70

Amino Acids

7.67

Weight (kDa)

4.83

Isoelectric Point (pI)

68.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	9, 48
AcoI	YGGCCR	2 cut(s)	3, 149
AgsI	TTSAA	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	97
AoxI	GGCC	3 cut(s)	3, 149, 181
BalI	TGGCCA	2 cut(s)	5, 151
BanI	GGYRCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	152
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	60, 202
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	18, 97, 98
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	18, 97, 98
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	5, 151, 183
BshNI	GGYRCC	1 cut(s)	200
BsnI	GGCC	3 cut(s)	5, 151, 183
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	2 cut(s)	9, 48
BspANI	GGCC	3 cut(s)	5, 151, 183
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	60, 202
BspT107I	GGYRCC	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	18, 97, 98
BssMI	GATC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 118
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	97
BstUI	CGCG	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	5, 151, 183
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	6 cut(s)	5, 47, 61, 103, 151, 183
CviKI_1	RGCY	6 cut(s)	5, 47, 61, 103, 151, 183
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EaeI	YGGCCR	2 cut(s)	3, 149
Eco130I	CCWWGG	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	159
FaiI	YATR	3 cut(s)	157, 209, 211
FatI	CATG	1 cut(s)	155
FauNDI	CATATG	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	3 cut(s)	5, 151, 183
Hin1II	CATG	1 cut(s)	159
HinfI	GANTC	2 cut(s)	23, 38
Hpy188I	TCNGA	2 cut(s)	30, 43
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	121, 127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 118
Hsp92II	CATG	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	84, 111, 155
LweI	GCATC	1 cut(s)	114
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	2 cut(s)	43, 152
MlsI	TGGCCA	2 cut(s)	5, 151
MluNI	TGGCCA	2 cut(s)	5, 151
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	2 cut(s)	191, 194
Mox20I	TGGCCA	2 cut(s)	5, 151
MscI	TGGCCA	2 cut(s)	5, 151
Msp20I	TGGCCA	2 cut(s)	5, 151
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	109, 118
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	2 cut(s)	60, 202
PasI	CCCWGGG	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	60, 202
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	1 cut(s)	202
SfaNI	GCATC	1 cut(s)	114
SgeI	CNNG	7 cut(s)	22, 31, 67, 110, 111, 168, 182
SsiI	CCGC	2 cut(s)	9, 48
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	36
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.