Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

53821058 .. 53827682

Gene Structure 6625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG381000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATCTTGGATCTACAGCTCAAGGCATGGCTTGAGGATGGAAAAGATATCCGTCTAGGGGACTGGAAAGCTGCTGATGTCGAGATCCTGAATACCTTTCAATTGCTAACAGTTAAGCCTGTTGTTTACTTGGTGAAATGCTGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGGTGTCAGTTTTTGAAGCTGCACACAGAAAATGGATTCTTCATGGGACAAGGGACAGAATGGGCCAAATCTTCTTCAATACTCCTGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

105

Amino Acids

12.06

Weight (kDa)

8.69

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YchF-GTPase_C	PF06071	45 - 81	4.6e-13	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	2 cut(s)	18, 79
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	101, 162, 239, 301
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	4 cut(s)	19, 71, 176, 242
AluI	AGCT	4 cut(s)	19, 71, 176, 242
AlwI	GGATC	2 cut(s)	18, 79
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	3 cut(s)	71, 176, 242
AspS9I	GGNCC	2 cut(s)	183, 286
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	3 cut(s)	58, 163, 229
BccI	CCATC	2 cut(s)	32, 194
BciT130I	CCWGG	1 cut(s)	309
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	2 cut(s)	14, 177
BisI	GCNGC	4 cut(s)	72, 155, 177, 243
BlsI	GCNGC	4 cut(s)	73, 156, 178, 244
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	183, 286
BmiI	GGNNCC	2 cut(s)	168, 184
BmrFI	CCNGG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	3 cut(s)	5, 53, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	43, 186
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	3 cut(s)	58, 163, 229
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	288
BslFI	GGGAC	4 cut(s)	74, 196, 283, 290
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmFI	GGGAC	4 cut(s)	74, 196, 283, 290
BsnI	GGCC	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	3, 10, 84
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	168, 184
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	2 cut(s)	18, 79
BsrI	ACTGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	3, 10, 84
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	43, 186
BstKTI	GATC	3 cut(s)	6, 13, 87
BstMBI	GATC	3 cut(s)	3, 10, 84
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 173
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	2 cut(s)	14, 177
BstV1I	GCAGC	3 cut(s)	58, 163, 229
BstX2I	RGATCY	2 cut(s)	10, 84
BstYI	RGATCY	2 cut(s)	10, 84
BsuRI	GGCC	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	43, 186
Cac8I	GCNNGC	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	183, 286
CviAII	CATG	2 cut(s)	27, 266
CviJI	RGCY	9 cut(s)	19, 31, 71, 118, 157, 167, 176, 242, 288
CviKI_1	RGCY	9 cut(s)	19, 31, 71, 118, 157, 167, 176, 242, 288
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	5, 12, 86
DpnII	GATC	3 cut(s)	3, 10, 84
Eco32I	GATATC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	49
FaeI	CATG	2 cut(s)	30, 269
FaiI	YATR	3 cut(s)	28, 192, 267
FaqI	GGGAC	4 cut(s)	74, 196, 283, 290
FatI	CATG	2 cut(s)	26, 265
Fnu4HI	GCNGC	4 cut(s)	72, 155, 177, 243
FokI	GGATG	2 cut(s)	50, 173
Fsp4HI	GCNGC	4 cut(s)	72, 155, 177, 243
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	4 cut(s)	72, 155, 177, 243
HaeIII	GGCC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	30, 269
HinfI	GANTC	2 cut(s)	210, 259
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	82, 88
Hpy8I	GTNNAC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	179, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 173
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	30, 269
Kzo9I	GATC	3 cut(s)	3, 10, 84
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	49, 101, 127, 132, 165, 294
Lsp1109I	GCAGC	3 cut(s)	58, 163, 229
MaeI	CTAG	1 cut(s)	56
MalI	GATC	3 cut(s)	5, 12, 86
MboI	GATC	3 cut(s)	3, 10, 84
MboII	GAAGA	3 cut(s)	254, 286, 289
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	2 cut(s)	10, 84
MluCI	AATT	2 cut(s)	101, 147
MnlI	CCTC	4 cut(s)	28, 180, 200, 217
MseI	TTAA	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	309
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	151, 173
NdeII	GATC	3 cut(s)	3, 10, 84
NlaIII	CATG	2 cut(s)	30, 269
NlaIV	GGNNCC	2 cut(s)	168, 184
PfeI	GAWTC	2 cut(s)	210, 259
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	4 cut(s)	73, 156, 178, 244
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	168, 184
PspPI	GGNCC	2 cut(s)	183, 286
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	10, 84
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	4 cut(s)	72, 155, 177, 243
Sau3AI	GATC	3 cut(s)	3, 10, 84
Sau96I	GGNCC	2 cut(s)	183, 286
ScrFI	CCNGG	1 cut(s)	309
SetI	ASST	6 cut(s)	21, 73, 98, 178, 228, 244
SfcI	CTRYAG	2 cut(s)	14, 177
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	3 cut(s)	20, 32, 171
SmoI	CTYRAG	3 cut(s)	20, 32, 171
Sse9I	AATT	2 cut(s)	101, 147
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	101, 147
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	210, 259
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	3 cut(s)	71, 176, 242
TspDTI	ATGAA	2 cut(s)	202, 254
TspGWI	ACGGA	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	183
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.