Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

14316580 .. 14320626

Gene Structure 4047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37010

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCCCGGGACGGAGGAACCGTACACAACTGCGATGACGACGGCGCAACCGGCATCAGCAGCCATGGCCACCGCGTCGCCCTTGGATTCTCCGAAGACAGACTCCGAAGCCGCCGACACGGAGCCAAACCCTAACCCTAATCCTTCAAACGCATTGTTCCCTGTTTCCCCAAACGACTTTGTTGTCTGCCTTCTCAGGTTCGCTGGGGACTCCGGTGGTGCATTCATGGGCTCTATCTTTGGCTATGGTTTCGCCTCTTCCTCTTTCTCTTTCTGTTTATCTGCCTGTTGCGTGGCCTATGGGAATTTGAGTTATTTTGGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

108

Amino Acids

11.09

Weight (kDa)

4.05

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccII	CGCG	1 cut(s)	74
AciI	CCGC	2 cut(s)	72, 111
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	304
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	2 cut(s)	66, 294
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	46
AsuC2I	CCSGG	2 cut(s)	6, 7
AvaI	CYCGRG	1 cut(s)	5
BalI	TGGCCA	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	57
BcnI	CCSGG	2 cut(s)	6, 7
BisI	GCNGC	2 cut(s)	60, 111
BlsI	GCNGC	2 cut(s)	61, 112
Bme1390I	CCNGG	2 cut(s)	6, 7
BmeT110I	CYCGRG	1 cut(s)	5
BmiI	GGNNCC	2 cut(s)	18, 123
BmrFI	CCNGG	2 cut(s)	6, 7
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	101
BpuMI	CCSGG	2 cut(s)	6, 7
BsaJI	CCNNGG	3 cut(s)	5, 63, 81
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bse118I	RCCGGY	1 cut(s)	49
BseDI	CCNNGG	3 cut(s)	5, 63, 81
BseGI	GGATG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	68, 296
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	6, 50, 213
BslFI	GGGAC	2 cut(s)	22, 221
BsmFI	GGGAC	2 cut(s)	22, 221
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	68, 296
BsoBI	CYCGRG	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	2 cut(s)	72, 111
BspANI	GGCC	2 cut(s)	68, 296
BspCNI	CTCAG	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	18, 123
BsrFI	RCCGGY	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	5, 63, 81
BssT1I	CCWWGG	2 cut(s)	63, 81
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 59, 65
BstSCI	CCNGG	2 cut(s)	4, 5
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	68, 296
BtgI	CCRYGG	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	49
Cfr9I	CCCGGG	1 cut(s)	5
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	2 cut(s)	64, 226
CviJI	RGCY	7 cut(s)	62, 68, 110, 124, 231, 243, 296
CviKI_1	RGCY	7 cut(s)	62, 68, 110, 124, 231, 243, 296
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	194
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	63, 81
Eco24I	GRGCYC	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	5
EcoT14I	CCWWGG	2 cut(s)	63, 81
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	2 cut(s)	63, 81
FaeI	CATG	2 cut(s)	67, 229
FaiI	YATR	4 cut(s)	65, 227, 246, 300
FaqI	GGGAC	2 cut(s)	22, 221
FatI	CATG	2 cut(s)	63, 225
Fnu4HI	GCNGC	2 cut(s)	60, 111
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	60, 111
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	2 cut(s)	60, 111
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	68, 296
HapII	CCGG	3 cut(s)	6, 50, 213
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	67, 229
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	3 cut(s)	86, 101, 209
HpaII	CCGG	3 cut(s)	6, 50, 213
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	2 cut(s)	93, 106
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	2 cut(s)	43, 79
HpyAV	CCTTC	2 cut(s)	153, 200
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 59, 65
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	67, 229
HspAI	GCGC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	7 cut(s)	19, 63, 174, 181, 189, 226, 298
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	62
MboII	GAAGA	2 cut(s)	106, 249
MhlI	GDGCHC	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	1 cut(s)	304
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	2 cut(s)	95, 203
MnlI	CCTC	3 cut(s)	7, 265, 271
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	3 cut(s)	6, 50, 213
MspR9I	CCNGG	2 cut(s)	6, 7
Mva1269I	GAATGC	1 cut(s)	221
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	50, 59, 65
NciI	CCSGG	2 cut(s)	6, 7
NcoI	CCATGG	1 cut(s)	63
NlaIII	CATG	2 cut(s)	67, 229
NlaIV	GGNNCC	2 cut(s)	18, 123
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	61, 112
PleI	GAGTC	2 cut(s)	95, 203
PpsI	GAGTC	2 cut(s)	95, 203
PspFI	CCCAGC	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	18, 123
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SatI	GCNGC	2 cut(s)	60, 111
SchI	GAGTC	2 cut(s)	95, 203
ScrFI	CCNGG	2 cut(s)	6, 7
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	62
SmaI	CCCGGG	1 cut(s)	7
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	2 cut(s)	72, 111
StyD4I	CCNGG	2 cut(s)	4, 5
StyI	CCWWGG	2 cut(s)	63, 81
TaaI	ACNGT	1 cut(s)	21
TasI	AATT	1 cut(s)	304
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	214
TspGWI	ACGGA	2 cut(s)	26, 134
TspMI	CCCGGG	1 cut(s)	5
XapI	RAATTY	1 cut(s)	304
XmaI	CCCGGG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.