Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

2060817 .. 2061242

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0032100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTCTGGTGGGGTTTCCGGTGGCGGCGGAGATGGAGGAGACGAAGTCTGGCAGCTACTTCAACATCTCATTCATCACCTTCGTCAGTGGCCAGCACACCATGTGGATCTTTGATCCGGTGTGCCAGTCGCTCGCAGAAGTTGTCCGGGTGCAAGCCACATTCGCCGGACGACCCACGGCTGCCGGAGAATTTCTTCTCCCGCCCCTTGCCGCCTCAGAAATGGCTCGTCCGGCGAGCAATTCCAACTTCTATGTTTGGGTTGATAACCTTCTTTACCTCGCGAATCCAAGACTCGTGCAGACATATGAGGACCCGGTGGCCGCCCGGTCGCTAGACGCGATCCAAGGCCGGAGTATGTACATCCGGTTTTGTGTCGCTCCAGTATCCGACCCAGATCTGTGTTCACACTTGAACAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

141

Amino Acids

15.51

Weight (kDa)

4.8

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	284, 341
AciI	CCGC	5 cut(s)	26, 29, 203, 213, 324
AclWI	GGATC	3 cut(s)	110, 116, 337
AcoI	YGGCCR	2 cut(s)	91, 321
AcsI	RAATTY	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	64, 415
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	3 cut(s)	110, 116, 337
AoxI	GGCC	3 cut(s)	91, 321, 349
ApeKI	GCWGC	2 cut(s)	54, 182
ApoI	RAATTY	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	313
AsuC2I	CCSGG	3 cut(s)	149, 317, 328
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	93
BauI	CACGAG	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	66, 169
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	195
BciVI	GTATCC	1 cut(s)	397
BcnI	CCSGG	3 cut(s)	149, 317, 328
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	5 cut(s)	27, 55, 183, 213, 324
BlsI	GCNGC	5 cut(s)	28, 56, 184, 214, 325
Bme1390I	CCNGG	3 cut(s)	149, 317, 328
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	3 cut(s)	149, 317, 328
BpmI	CTGGAG	1 cut(s)	366
BpuMI	CCSGG	3 cut(s)	149, 317, 328
BsaJI	CCNNGG	2 cut(s)	177, 346
BsaWI	WCCGGW	3 cut(s)	19, 118, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	2 cut(s)	127, 383
BseDI	CCNNGG	2 cut(s)	177, 346
BseGI	GGATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	127, 383
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	66, 169
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	2 cut(s)	284, 341
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	93, 323, 351
BsiEI	CGRYCG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	35
BsmBI	CGTCTC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	93, 323, 351
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	4 cut(s)	108, 115, 342, 397
Bsp68I	TCGCGA	1 cut(s)	284
BspACI	CCGC	5 cut(s)	26, 29, 203, 213, 324
BspANI	GGCC	3 cut(s)	93, 323, 351
BspCNI	CTCAG	1 cut(s)	230
BspFNI	CGCG	2 cut(s)	284, 341
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	3 cut(s)	110, 116, 337
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	127, 383
BssECI	CCNNGG	2 cut(s)	177, 346
BssMI	GATC	4 cut(s)	108, 115, 342, 397
BssSI	CACGAG	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	4 cut(s)	95, 135, 156, 238
BstDEI	CTNAG	1 cut(s)	217
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	363
BstFNI	CGCG	2 cut(s)	284, 341
BstKTI	GATC	4 cut(s)	111, 118, 345, 400
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	4 cut(s)	108, 115, 342, 397
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 233
BstSCI	CCNGG	3 cut(s)	147, 315, 326
BstUI	CGCG	2 cut(s)	284, 341
BstV1I	GCAGC	2 cut(s)	66, 169
BstX2I	RGATCY	2 cut(s)	108, 397
BstYI	RGATCY	2 cut(s)	108, 397
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	3 cut(s)	93, 323, 351
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	94
BtuMI	TCGCGA	1 cut(s)	284
Cac8I	GCNNGC	4 cut(s)	95, 135, 156, 238
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	8 cut(s)	5, 57, 93, 158, 182, 227, 323, 351
CviKI_1	RGCY	8 cut(s)	5, 57, 93, 158, 182, 227, 323, 351
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	4 cut(s)	110, 117, 344, 399
DpnII	GATC	4 cut(s)	108, 115, 342, 397
DraIII	CACNNNGTG	1 cut(s)	105
EaeI	YGGCCR	2 cut(s)	91, 321
EciI	GGCGGA	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	1 cut(s)	106
FaiI	YATR	5 cut(s)	104, 255, 307, 309, 359
FatI	CATG	1 cut(s)	102
FauI	CCCGC	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	5 cut(s)	27, 55, 183, 213, 324
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	5 cut(s)	27, 55, 183, 213, 324
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	5 cut(s)	27, 55, 183, 213, 324
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	3 cut(s)	93, 323, 351
HgaI	GACGC	1 cut(s)	347
Hin1II	CATG	1 cut(s)	106
HinfI	GANTC	2 cut(s)	286, 294
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	2 cut(s)	220, 391
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	1 cut(s)	407
HpyAV	CCTTC	2 cut(s)	91, 281
HpyCH4V	TGCA	2 cut(s)	154, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 233
HpyF3I	CTNAG	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	108, 115, 342, 397
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	2 cut(s)	66, 169
MaeI	CTAG	1 cut(s)	335
MalI	GATC	4 cut(s)	110, 117, 344, 399
MboI	GATC	4 cut(s)	108, 115, 342, 397
MboII	GAAGA	1 cut(s)	188
MflI	RGATCY	2 cut(s)	108, 397
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	2 cut(s)	191, 241
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	288
MmeI	TCCRAC	2 cut(s)	270, 414
MnlI	CCTC	4 cut(s)	31, 226, 290, 304
Mox20I	TGGCCA	1 cut(s)	93
MroXI	GAANNNNTTC	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	93
MspR9I	CCNGG	3 cut(s)	149, 317, 328
MvnI	CGCG	2 cut(s)	284, 341
MwoI	GCNNNNNNNGC	2 cut(s)	164, 233
NciI	CCSGG	3 cut(s)	149, 317, 328
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	4 cut(s)	108, 115, 342, 397
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	315
NruI	TCGCGA	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	286
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	28, 56, 184, 214, 325
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PpuMI	RGGWCCY	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	313
PspPPI	RGGWCCY	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	108, 397
PsyI	GACNNNGTC	1 cut(s)	46
RruI	TCGCGA	1 cut(s)	284
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SatI	GCNGC	5 cut(s)	27, 55, 183, 213, 324
Sau3AI	GATC	4 cut(s)	108, 115, 342, 397
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	3 cut(s)	149, 317, 328
SetI	ASST	4 cut(s)	59, 83, 273, 282
SinI	GGWCC	1 cut(s)	313
Sse9I	AATT	2 cut(s)	191, 241
SsiI	CCGC	5 cut(s)	26, 29, 203, 213, 324
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	3 cut(s)	147, 315, 326
StyI	CCWWGG	1 cut(s)	346
TasI	AATT	2 cut(s)	191, 241
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	3 cut(s)	29, 215, 326
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	2 cut(s)	54, 182
TspDTI	ATGAA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	94
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.