Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Reverse (-)

25734457 .. 25736784

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG158400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGATCTTGGATCTACAGCTCAAGGCATGGCTTGAGGATGGAAAAGATATCCGTCTAGGGGACTGGAAAGCTGCTGATGTCGAGATCCTGAATACCTTTCAATTGCTAACAGCTAAGCCTGTTGTTTACTTGGTTTTTGGCCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

49

Amino Acids

5.59

Weight (kDa)

4.6

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	18, 79
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	101
AluBI	AGCT	3 cut(s)	19, 71, 113
AluI	AGCT	3 cut(s)	19, 71, 113
AlwI	GGATC	2 cut(s)	18, 79
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	14
BisI	GCNGC	1 cut(s)	72
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	5, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	3, 10, 84
Bsp1720I	GCTNAGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	18, 79
BsrI	ACTGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	3, 10, 84
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	3 cut(s)	6, 13, 87
BstMBI	GATC	3 cut(s)	3, 10, 84
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	2 cut(s)	10, 84
BstYI	RGATCY	2 cut(s)	10, 84
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	43
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	6 cut(s)	19, 31, 71, 113, 118, 141
CviKI_1	RGCY	6 cut(s)	19, 31, 71, 113, 118, 141
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	5, 12, 86
DpnII	GATC	3 cut(s)	3, 10, 84
Eco32I	GATATC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	49
FaeI	CATG	1 cut(s)	30
FaiI	YATR	1 cut(s)	28
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	82, 88
Hpy8I	GTNNAC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	3, 10, 84
LpnPI	CCDG	3 cut(s)	49, 101, 132
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	56
MalI	GATC	3 cut(s)	5, 12, 86
MboI	GATC	3 cut(s)	3, 10, 84
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	2 cut(s)	10, 84
MluCI	AATT	1 cut(s)	101
MnlI	CCTC	1 cut(s)	28
MunI	CAATTG	1 cut(s)	101
NdeII	GATC	3 cut(s)	3, 10, 84
NlaIII	CATG	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	10, 84
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	3 cut(s)	3, 10, 84
SetI	ASST	4 cut(s)	21, 73, 98, 115
SfcI	CTRYAG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	20, 32
SmoI	CTYRAG	2 cut(s)	20, 32
Sse9I	AATT	1 cut(s)	101
SspMI	CTAG	1 cut(s)	56
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	101
TseI	GCWGC	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	41
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.