Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Reverse (-)

23605020 .. 23608780

Gene Structure 3761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20820.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCCTCCGAAATCTGCAAAATCCAAGGAAGCACCAGCCGAGCGACCCATCCTCGGCCGATTCTCTTCTCACCTCAAGATTGGCATCGTTGGATTGCCGAATGTTGGAAAATCCACTCTGTTTAACACTCTCACAAAGTTGTCGATACCTGCCGAGAACTTCCCTTTCTGCACAATTGAACCCAATGAAGCCCGAGTCCATGTTCCCGATGAGCGATTTGACTGGCTTTGCCAGTTATACAAGCCGAAAAGCGAGGTCTCAGCTTTTTTGGAAATCCATGATATTGCTGGACTTGTTCGAGGTGCCCATGAAGGACAAGGGTTGGGCAACAGTTTCTTATCCCATATCCGTGCAGTTGATGGCATTTTTCACGTTCTACTTGAAGATCCGGATATCATCCATGTTGATGATACCGTGGATCCTGTGAGGGATTTGGAGATTATTAGCGCAGAATTACGCCTAAAGGATATTGAATTCATTGAGAGGAGGATAGAAGATCTAGAAAAGAGCATGAAGAGAAGCAATGAGAAGGCATTAAAGATTGAACATGAGTTGTGCCAAAAGATCAAGGCATGGCTTGAGGATGGAAAAGATGTCCGTCTTGGGGACTGGAAAGCTGCTGAAGTTGAGATCCTGAATACCTTTCAATTGCTGACAGCCAAGCCTGTTGTTTACTTGGTTAACATGAATGAGAAAGATTACCAGAGGAAAAAGAACAAGTTCTTGCCAAAGATCCATGCGTGGGTGCAGGAACATGGAGCTGAACCAATTATTCCATTCAGCTGTGCGTTAGAAAGGAATCTCGCTGATTTGCCACCTGAAGAAGCAGCAAAGTATTGTGAGCAGAACAACGTGCAAAGTGCCCTTACCAAGATCGATAAAGACTGGATTTTCAGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

301

Amino Acids

34.13

Weight (kDa)

5.66

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	388
AclWI	GGATC	5 cut(s)	380, 413, 426, 625, 727
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	2 cut(s)	642, 840
AfiI	CCNNNNNNNGG	4 cut(s)	53, 104, 604, 742
AgsI	TTSAA	5 cut(s)	179, 383, 473, 545, 647
AluBI	AGCT	4 cut(s)	263, 617, 761, 783
AluI	AGCT	4 cut(s)	263, 617, 761, 783
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	5 cut(s)	380, 413, 426, 625, 727
Ama87I	CYCGRG	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	617, 827
ApoI	RAATTY	1 cut(s)	473
Asp700I	GAANNNNTTC	1 cut(s)	719
AspLEI	GCGC	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	192
BaeGI	GKGCMC	2 cut(s)	307, 865
BamHI	GGATCC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	604, 839
BccI	CCATC	3 cut(s)	56, 353, 578
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	500
BfuAI	ACCTGC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	2 cut(s)	618, 828
BlsI	GCNGC	2 cut(s)	619, 829
BmeT110I	CYCGRG	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	304, 420
BmsI	GCATC	1 cut(s)	93
BpuEI	CTTGAG	2 cut(s)	59, 599
Bsa29I	ATCGAT	1 cut(s)	876
BsaBI	GATNNNNATC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	3 cut(s)	24, 52, 414
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 104, 604, 742
Bse1I	ACTGG	4 cut(s)	227, 232, 614, 890
Bse3DI	GCAATG	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	388
BseCI	ATCGAT	1 cut(s)	876
BseDI	CCNNGG	3 cut(s)	24, 52, 414
BseGI	GGATG	3 cut(s)	48, 396, 589
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	4 cut(s)	53, 104, 604, 742
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	4 cut(s)	227, 232, 614, 890
BseRI	GAGGAG	1 cut(s)	499
BseSI	GKGCMC	2 cut(s)	307, 865
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	604, 839
BsgI	GTGCAG	3 cut(s)	154, 372, 767
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	876
BsiEI	CGRYCG	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	4 cut(s)	53, 104, 604, 742
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	307, 865
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	7 cut(s)	385, 418, 496, 564, 630, 732, 873
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	272
BspDI	ATCGAT	1 cut(s)	876
BspEI	TCCGGA	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	304, 420
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	5 cut(s)	380, 413, 426, 625, 727
BspT107I	GGYRCC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	4 cut(s)	227, 232, 614, 890
BssECI	CCNNGG	3 cut(s)	24, 52, 414
BssMI	GATC	7 cut(s)	385, 418, 496, 564, 630, 732, 873
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	332, 415
Bst6I	CTCTTC	2 cut(s)	70, 509
BstDEI	CTNAG	1 cut(s)	259
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	3 cut(s)	48, 396, 589
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	7 cut(s)	388, 421, 499, 567, 633, 735, 876
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	7 cut(s)	385, 418, 496, 564, 630, 732, 873
BstMCI	CGRYCG	1 cut(s)	58
BstSLI	GKGCMC	2 cut(s)	307, 865
BstV1I	GCAGC	2 cut(s)	604, 839
BstX2I	RGATCY	5 cut(s)	385, 418, 496, 630, 732
BstYI	RGATCY	5 cut(s)	385, 418, 496, 630, 732
BstZI	CGGCCG	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	876
BsuRI	GGCC	1 cut(s)	57
BsuTUI	ATCGAT	1 cut(s)	876
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	3 cut(s)	48, 396, 589
BveI	ACCTGC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	449
ClaI	ATCGAT	1 cut(s)	876
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	7 cut(s)	387, 420, 498, 566, 632, 734, 875
DpnII	GATC	7 cut(s)	385, 418, 496, 564, 630, 732, 873
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	70, 509
EarI	CTCTTC	2 cut(s)	70, 509
EclXI	CGGCCG	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	394
Eco52I	CGGCCG	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	642, 840
Eco88I	CYCGRG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	473
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaqI	GGGAC	1 cut(s)	620
Fnu4HI	GCNGC	2 cut(s)	618, 828
FokI	GGATG	3 cut(s)	35, 383, 596
Fsp4HI	GCNGC	2 cut(s)	618, 828
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	2 cut(s)	618, 828
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	449
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	3 cut(s)	60, 195, 799
HpaI	GTTAAC	1 cut(s)	682
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	2 cut(s)	673, 682
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	5 cut(s)	76, 206, 389, 500, 634
Hpy8I	GTNNAC	2 cut(s)	673, 682
HpyAV	CCTTC	2 cut(s)	305, 523
HpyCH4III	ACNGT	2 cut(s)	332, 415
HpyCH4IV	ACGT	2 cut(s)	372, 852
HpyCH4V	TGCA	5 cut(s)	17, 171, 353, 748, 856
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	2 cut(s)	372, 852
HspAI	GCGC	1 cut(s)	447
Kpn2I	TCCGGA	1 cut(s)	388
KspAI	GTTAAC	1 cut(s)	682
Kzo9I	GATC	7 cut(s)	385, 418, 496, 564, 630, 732, 873
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	2 cut(s)	604, 839
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	2 cut(s)	372, 852
MalI	GATC	7 cut(s)	387, 420, 498, 566, 632, 734, 875
MboI	GATC	7 cut(s)	385, 418, 496, 564, 630, 732, 873
MboII	GAAGA	5 cut(s)	57, 395, 506, 526, 833
MfeI	CAATTG	2 cut(s)	174, 647
MflI	RGATCY	5 cut(s)	385, 418, 496, 630, 732
MhlI	GDGCHC	2 cut(s)	307, 865
MluCI	AATT	5 cut(s)	174, 452, 473, 647, 768
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	2 cut(s)	70, 85
MroI	TCCGGA	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	719
MseI	TTAA	4 cut(s)	123, 536, 681, 901
MslI	CAYNNNNRTG	2 cut(s)	348, 405
MspA1I	CMGCKG	1 cut(s)	783
MspI	CCGG	1 cut(s)	389
MunI	CAATTG	2 cut(s)	174, 647
NdeII	GATC	7 cut(s)	385, 418, 496, 564, 630, 732, 873
NlaIV	GGNNCC	2 cut(s)	304, 420
NmeAIII	GCCGAG	3 cut(s)	33, 64, 178
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	60, 799
PkrI	GCNGC	2 cut(s)	619, 829
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	304, 420
PsuI	RGATCY	5 cut(s)	385, 418, 496, 630, 732
PvuII	CAGCTG	1 cut(s)	783
RseI	CAYNNNNRTG	2 cut(s)	348, 405
SaqAI	TTAA	4 cut(s)	123, 536, 681, 901
SatI	GCNGC	2 cut(s)	618, 828
Sau3AI	GATC	7 cut(s)	385, 418, 496, 564, 630, 732, 873
SchI	GAGTC	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	307, 865
SfaNI	GCATC	1 cut(s)	93
SmiMI	CAYNNNNRTG	2 cut(s)	348, 405
SmlI	CTYRAG	2 cut(s)	74, 578
SmoI	CTYRAG	2 cut(s)	74, 578
Sse9I	AATT	5 cut(s)	174, 452, 473, 647, 768
SspMI	CTAG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	332, 415
TaiI	ACGT	2 cut(s)	375, 855
TaqI	TCGA	3 cut(s)	143, 298, 876
TasI	AATT	5 cut(s)	174, 452, 473, 647, 768
TfiI	GAWTC	2 cut(s)	60, 799
Tru1I	TTAA	4 cut(s)	123, 536, 681, 901
Tru9I	TTAA	4 cut(s)	123, 536, 681, 901
TseI	GCWGC	2 cut(s)	617, 827
TspDTI	ATGAA	5 cut(s)	201, 324, 466, 527, 701
TspGWI	ACGGA	2 cut(s)	338, 587
XapI	RAATTY	1 cut(s)	473
XbaI	TCTAGA	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.