Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

11460243 .. 11466969

Gene Structure 6727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG137000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCCTCCCAAGTCTGCGAAAGGCAAGGAAGCCCCAGCTGAGCGACCCATCCTCGGCCGATTCTCATCTCACCTCAAGATTGGAATCGTTGGATTGCCGAATGTTGGAAAATCTACTCTTTTCAACACGCTCACGAAGTTGTCGATACCCGCTGAGAACTTCCCTTTCTGCACAATTGAACCCAATGAAGCCAGGGTCAACATTCCTGATGAGCGGTTTGACTGGCTTTGCCAATTGTACAAGCCGAAAAGCGCGGTATCAGCCTTTTTGGAAATCCATGATATAGCTGGACTTGTTCGTGGTGCTCATGAAGGACAAGGGTTGGGCAACAGTTTCTTATCCCATATCCGTGCTGTTGATGGCATTTTTCATGTTTTACGTGCATTTGAAGATCCGGATATCATCCATGTCGATGATACTGTGGATCCTGTGAGGGATTTAGAGATTATCAGTGCAGAATTGCGTCTTAAGGACATTGAATTCATGGAAAGGAGGATAGAGGATGTTGAAAAGAGCATGAAGAGGAGCAATGACAAGCAGCTAAAAGTAGAGCATGAACTTTGTGGAAGGCTCAAGGCATGGCTTGAGGATGGAAAAGATATCCGTCTAGGGGACTGGAAAGCTGCTGATGTCGAGATCCTGAATACCTTTCAATTGCTAACAGCTAAGCCTGTTGTTTACTTGGTTAACATGAATGAGAGAGATTACCAAAGGAAGAAGAATAAGTTCTTGCCAAAGATCCATGCATGGGTGCAGGAACATGGAGGTGAGAAAATTATTCCATTCAGCTGTGCACTGGAAAGGAATCTTGCTGATTTGCCACCAGATGAAGCAGCAAAGTATTGTGAGGAGAACAAAGTGGAATGTGCCCTTCCGAAGATCATAAAGACTGGATTTTCAGCCATTAATCTCATATACTTTTTCACGGCTGGTCCTGATGAGGTGAAATGCTGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGGTAGCTTCTAGCTTACATTTTAACTCTTGTCTGGCACTATTGTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

361

Amino Acids

40.76

Weight (kDa)

6.29

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	26 - 131	4e-20	50S ribosome-binding GTPase
FeoB_N	PF02421	26 - 72	2.6e-07	Ferrous iron transport protein B
YchF-GTPase_C	PF06071	304 - 352	1.6e-18	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	214
AccII	CGCG	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	4 cut(s)	150, 214, 254, 964
AclWI	GGATC	5 cut(s)	386, 419, 432, 631, 733
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	479
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	4 cut(s)	53, 104, 610, 748
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	7 cut(s)	124, 179, 389, 479, 509, 653, 972
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	9 cut(s)	38, 287, 541, 623, 665, 789, 986, 1040, 1047
AluI	AGCT	9 cut(s)	38, 287, 541, 623, 665, 789, 986, 1040, 1047
Alw21I	GWGCWC	2 cut(s)	307, 796
Alw44I	GTGCAC	1 cut(s)	792
AlwI	GGATC	5 cut(s)	386, 419, 432, 631, 733
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	1 cut(s)	55
ApaLI	GTGCAC	1 cut(s)	792
ApeKI	GCWGC	4 cut(s)	538, 623, 833, 986
ApoI	RAATTY	1 cut(s)	479
AseI	ATTAAT	1 cut(s)	906
Asp700I	GAANNNNTTC	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	932, 993
AsuHPI	GGTGA	3 cut(s)	62, 779, 955
AvaII	GGWCC	2 cut(s)	932, 993
BaeGI	GKGCMC	2 cut(s)	796, 871
BamHI	GGATCC	1 cut(s)	424
Bbv12I	GWGCWC	2 cut(s)	307, 796
BbvCI	CCTCAGC	1 cut(s)	1032
BbvI	GCAGC	4 cut(s)	550, 610, 845, 973
BccI	CCATC	4 cut(s)	56, 353, 584, 1004
BceAI	ACGGC	1 cut(s)	942
BciT130I	CCWGG	1 cut(s)	193
BfaI	CTAG	2 cut(s)	608, 1044
BfmI	CTRYAG	1 cut(s)	987
BfrI	CTTAAG	1 cut(s)	467
BisI	GCNGC	5 cut(s)	539, 624, 834, 965, 987
BlpI	GCTNAGC	2 cut(s)	39, 666
BlsI	GCNGC	5 cut(s)	540, 625, 835, 966, 988
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	2 cut(s)	932, 993
BmgT120I	GGNCC	2 cut(s)	932, 993
BmiI	GGNNCC	3 cut(s)	426, 978, 994
BmrFI	CCNGG	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	1032
Bpu1102I	GCTNAGC	2 cut(s)	39, 666
BpuEI	CTTGAG	4 cut(s)	59, 557, 605, 966
BsaAI	YACGTR	1 cut(s)	380
BsaBI	GATNNNNATC	2 cut(s)	64, 83
BsaJI	CCNNGG	2 cut(s)	52, 192
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	4 cut(s)	53, 104, 610, 748
Bse1I	ACTGG	4 cut(s)	227, 620, 801, 895
Bse3DI	GCAATG	1 cut(s)	535
Bse8I	GATNNNNATC	2 cut(s)	64, 83
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	52, 192
BseGI	GGATG	5 cut(s)	48, 402, 508, 595, 996
BseJI	GATNNNNATC	2 cut(s)	64, 83
BseLI	CCNNNNNNNGG	4 cut(s)	53, 104, 610, 748
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	30, 144, 1023
BseNI	ACTGG	4 cut(s)	227, 620, 801, 895
BseRI	GAGGAG	3 cut(s)	538, 863, 969
BseSI	GKGCMC	2 cut(s)	796, 871
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	4 cut(s)	550, 610, 845, 973
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	3 cut(s)	154, 474, 773
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	307, 796
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	2 cut(s)	626, 1006
BslI	CCNNNNNNNGG	4 cut(s)	53, 104, 610, 748
BsmFI	GGGAC	2 cut(s)	626, 1006
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	3 cut(s)	307, 796, 871
Bsp13I	TCCGGA	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	391, 424, 636, 738, 879
Bsp1720I	GCTNAGC	2 cut(s)	39, 666
BspACI	CCGC	4 cut(s)	150, 214, 254, 964
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	3 cut(s)	31, 145, 1024
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	426, 978, 994
BspMAI	CTGCAG	1 cut(s)	991
BspPI	GGATC	5 cut(s)	386, 419, 432, 631, 733
BspTI	CTTAAG	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	535
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	4 cut(s)	227, 620, 801, 895
BssECI	CCNNGG	2 cut(s)	52, 192
BssMI	GATC	5 cut(s)	391, 424, 636, 738, 879
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	332, 421
Bst6I	CTCTTC	1 cut(s)	515
BstAFI	CTTAAG	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	953
BstDEI	CTNAG	4 cut(s)	39, 153, 666, 1032
BstF5I	GGATG	5 cut(s)	48, 402, 508, 595, 996
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	5 cut(s)	394, 427, 639, 741, 882
BstMBI	GATC	5 cut(s)	391, 424, 636, 738, 879
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 961, 983, 1037
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	2 cut(s)	796, 871
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	4 cut(s)	550, 610, 845, 973
BstX2I	RGATCY	4 cut(s)	391, 424, 636, 738
BstYI	RGATCY	4 cut(s)	391, 424, 636, 738
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	5 cut(s)	48, 402, 508, 595, 996
BtsIMutI	CAGTG	2 cut(s)	457, 794
Cac8I	GCNNGC	1 cut(s)	953
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	932, 993
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	238
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	4 cut(s)	39, 153, 666, 1032
DpnI	GATC	5 cut(s)	393, 426, 638, 740, 881
DpnII	GATC	5 cut(s)	391, 424, 636, 738, 879
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
EclXI	CGGCCG	1 cut(s)	55
Eco32I	GATATC	2 cut(s)	400, 601
Eco47I	GGWCC	2 cut(s)	932, 993
Eco52I	CGGCCG	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	191
EcoRV	GATATC	2 cut(s)	400, 601
EcoT22I	ATGCAT	1 cut(s)	748
FaqI	GGGAC	2 cut(s)	626, 1006
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	5 cut(s)	539, 624, 834, 965, 987
FokI	GGATG	5 cut(s)	35, 389, 515, 602, 983
Fsp4HI	GCNGC	5 cut(s)	539, 624, 834, 965, 987
FspBI	CTAG	2 cut(s)	608, 1044
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	5 cut(s)	539, 624, 834, 965, 987
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	2 cut(s)	199, 688
HindII	GTYRAC	2 cut(s)	199, 688
HinfI	GANTC	4 cut(s)	60, 84, 805, 1020
HpaI	GTTAAC	1 cut(s)	688
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	3 cut(s)	62, 779, 955
Hpy166II	GTNNAC	4 cut(s)	199, 679, 688, 794
Hpy188I	TCNGA	1 cut(s)	876
Hpy188III	TCNNGA	8 cut(s)	76, 133, 206, 308, 395, 634, 640, 935
Hpy8I	GTNNAC	4 cut(s)	199, 679, 688, 794
HpyAV	CCTTC	3 cut(s)	305, 561, 881
HpyCH4III	ACNGT	2 cut(s)	332, 421
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	7 cut(s)	171, 383, 455, 746, 754, 794, 989
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 961, 983, 1037
HpyF3I	CTNAG	4 cut(s)	39, 153, 666, 1032
HpySE526I	ACGT	1 cut(s)	379
HspAI	GCGC	1 cut(s)	252
Kpn2I	TCCGGA	1 cut(s)	394
KspAI	GTTAAC	1 cut(s)	688
Kzo9I	GATC	5 cut(s)	391, 424, 636, 738, 879
LmnI	GCTCC	2 cut(s)	525, 982
Lsp1109I	GCAGC	4 cut(s)	550, 610, 845, 973
MaeI	CTAG	2 cut(s)	608, 1044
MaeII	ACGT	1 cut(s)	379
MalI	GATC	5 cut(s)	393, 426, 638, 740, 881
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	5 cut(s)	391, 424, 636, 738, 879
MboII	GAAGA	5 cut(s)	401, 532, 727, 730, 889
MfeI	CAATTG	3 cut(s)	174, 233, 653
MflI	RGATCY	4 cut(s)	391, 424, 636, 738
MhlI	GDGCHC	3 cut(s)	307, 796, 871
MluCI	AATT	7 cut(s)	174, 233, 458, 479, 653, 774, 957
MmeI	TCCRAC	2 cut(s)	70, 85
Mph1103I	ATGCAT	1 cut(s)	748
MroI	TCCGGA	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	4 cut(s)	468, 687, 906, 1056
MslI	CAYNNNNRTG	3 cut(s)	348, 411, 765
MspA1I	CMGCKG	3 cut(s)	38, 152, 789
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	193
MunI	CAATTG	3 cut(s)	174, 233, 653
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	260, 961, 983, 1037
NdeII	GATC	5 cut(s)	391, 424, 636, 738, 879
NlaIV	GGNNCC	3 cut(s)	426, 978, 994
NmeAIII	GCCGAG	1 cut(s)	33
NsiI	ATGCAT	1 cut(s)	748
PagI	TCATGA	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	4 cut(s)	60, 84, 805, 1020
PkrI	GCNGC	5 cut(s)	540, 625, 835, 966, 988
Ppu21I	YACGTR	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	906
Psp6I	CCWGG	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	3 cut(s)	426, 978, 994
PspPI	GGNCC	2 cut(s)	932, 993
PstI	CTGCAG	1 cut(s)	991
PsuI	RGATCY	4 cut(s)	391, 424, 636, 738
PvuII	CAGCTG	2 cut(s)	38, 789
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	3 cut(s)	348, 411, 765
SaqAI	TTAA	4 cut(s)	468, 687, 906, 1056
SatI	GCNGC	5 cut(s)	539, 624, 834, 965, 987
Sau3AI	GATC	5 cut(s)	391, 424, 636, 738, 879
Sau96I	GGNCC	2 cut(s)	932, 993
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	3 cut(s)	307, 796, 871
SfcI	CTRYAG	1 cut(s)	987
SinI	GGWCC	2 cut(s)	932, 993
SmiMI	CAYNNNNRTG	3 cut(s)	348, 411, 765
SmlI	CTYRAG	5 cut(s)	74, 467, 572, 584, 981
SmoI	CTYRAG	5 cut(s)	74, 467, 572, 584, 981
Sse9I	AATT	7 cut(s)	174, 233, 458, 479, 653, 774, 957
SsiI	CCGC	4 cut(s)	150, 214, 254, 964
SspMI	CTAG	2 cut(s)	608, 1044
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	332, 421
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	143, 411, 633
TasI	AATT	7 cut(s)	174, 233, 458, 479, 653, 774, 957
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	967
TfiI	GAWTC	4 cut(s)	60, 84, 805, 1020
Tru1I	TTAA	4 cut(s)	468, 687, 906, 1056
Tru9I	TTAA	4 cut(s)	468, 687, 906, 1056
TscAI	CASTG	2 cut(s)	457, 801
TseI	GCWGC	4 cut(s)	538, 623, 833, 986
TspDTI	ATGAA	9 cut(s)	201, 324, 359, 472, 533, 570, 707, 843, 1012
TspGWI	ACGGA	2 cut(s)	338, 593
TspRI	CASTG	2 cut(s)	457, 801
Vha464I	CTTAAG	1 cut(s)	467
VneI	GTGCAC	1 cut(s)	792
VpaK11BI	GGWCC	2 cut(s)	932, 993
VspI	ATTAAT	1 cut(s)	906
XapI	RAATTY	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	2 cut(s)	608, 1044
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.