Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030879.1

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Reverse (-)

32483 .. 35560

Gene Structure 3078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030879.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 223 bp

gcggctttcaaaggctcctcaagctgcagggaccatccatactgattttgagagaggattcatttgtgctgaggtcatgaagtttgaagatctaaaggaacttggtagcgaaccagctgttaaggctgccggtaagtacagacaagaagggaagacatacgtggtccaagatggagacataatattcttcaagttcaatgtttctggaggtgggaagaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

73

Amino Acids

8.01

Weight (kDa)

8.8

Isoelectric Point (pI)

24.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	2
AfaI	GTAC	1 cut(s)	138
AgsI	TTSAA	4 cut(s)	10, 87, 191, 197
AluBI	AGCT	2 cut(s)	24, 117
AluI	AGCT	2 cut(s)	24, 117
Alw26I	GTCTC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	24, 126
AspS9I	GGNCC	2 cut(s)	31, 164
AvaII	GGWCC	2 cut(s)	31, 164
BbsI	GAAGAC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	11, 113
BccI	CCATC	2 cut(s)	42, 165
BcoDI	GTCTC	1 cut(s)	169
BfmI	CTRYAG	1 cut(s)	25
BglII	AGATCT	1 cut(s)	89
BisI	GCNGC	3 cut(s)	3, 25, 127
BlsI	GCNGC	3 cut(s)	4, 26, 128
Bme18I	GGWCC	2 cut(s)	31, 164
BmgT120I	GGNCC	2 cut(s)	31, 164
BmiI	GGNNCC	2 cut(s)	16, 32
BpiI	GAAGAC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	4
BsaAI	YACGTR	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	129
BseGI	GGATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	11, 113
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	2
BspCNI	CTCAG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	16, 32
BspMAI	CTGCAG	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	129
BssAI	RCCGGY	1 cut(s)	129
BssMI	GATC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 123
BstSFI	CTRYAG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	11, 113
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	34
CciI	TCATGA	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	31, 164
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	5 cut(s)	5, 15, 24, 117, 126
CviKI_1	RGCY	5 cut(s)	5, 15, 24, 117, 126
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	70
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	31, 164
FaeI	CATG	1 cut(s)	80
FaiI	YATR	4 cut(s)	40, 78, 158, 180
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	3, 25, 127
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	3 cut(s)	3, 25, 127
GluI	GCNGC	3 cut(s)	3, 25, 127
HapII	CCGG	1 cut(s)	130
Hin1II	CATG	1 cut(s)	80
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	77, 205
HpyAV	CCTTC	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 123
HpyF3I	CTNAG	1 cut(s)	70
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	4 cut(s)	13, 127, 143, 190
Lsp1109I	GCAGC	2 cut(s)	11, 113
MaeII	ACGT	1 cut(s)	160
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	3 cut(s)	99, 164, 179
MflI	RGATCY	1 cut(s)	89
MnlI	CCTC	4 cut(s)	28, 48, 65, 201
MseI	TTAA	1 cut(s)	121
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	21, 123
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	16, 32
PagI	TCATGA	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	4, 26, 128
Ppu21I	YACGTR	1 cut(s)	161
PspN4I	GGNNCC	2 cut(s)	16, 32
PspPI	GGNCC	2 cut(s)	31, 164
PstI	CTGCAG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	121
SatI	GCNGC	3 cut(s)	3, 25, 127
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	2 cut(s)	31, 164
SetI	ASST	5 cut(s)	26, 76, 119, 163, 212
SfcI	CTRYAG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	31, 164
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
SsiI	CCGC	1 cut(s)	2
SspI	AATATT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	163
TatI	WGTACW	1 cut(s)	136
TauI	GCSGC	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	121
Tru9I	TTAA	1 cut(s)	121
TseI	GCWGC	2 cut(s)	24, 126
TspDTI	ATGAA	2 cut(s)	50, 93
VpaK11BI	GGWCC	2 cut(s)	31, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.