Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

6037741 .. 6039267

Gene Structure 1527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG070900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCCCGGGACGGAGGAACCGTACACAACTGCGATGACGACGGCGCAACCGGCATCAGCAGCCATGGCCACTGCGTCGCCCTTGGATTCTCCGAAGACAGACTCCGAAGCCGCCGACACGGAGCCAAACCCTAACCCTAATCCTTCAAACGCATTGTTCCCTGTTTCCCCAAACGGCTTTGTTGTCTGCCTTCTCAGAATTATCTGCAGAGAACTTGCTGACAACTACTGCTTTTACCAGCCTCAATATGATTCATTGCAAGGGGCATGGGAATGGGCACGTAAGACCTTAATGGACCATGCTTCGGATAAGCGAGAACATATTTACACGAGGGAGCAATTGGAGAAGGCACAAACTGCTGATCCTGTCTGGAATGCCTCCCAATGTGAGATGGTTCATTATGGGAAGATGCATGGTTTTATGCATTTGCTTGTCCCAGTTAAGCAGTTCTTCTATTTGCTGAGCATGGCATCACATAGTGCTTGCATTGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000719 GO:0003674 GO:0003824 GO:0003904 GO:0003913 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051716 GO:0071704 GO:0071949 GO:0090304 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_photolyase

Protein Analysis

165

Amino Acids

18.46

Weight (kDa)

4.99

Isoelectric Point (pI)

66.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	147
AlwI	GGATC	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	2 cut(s)	6, 7
AvaI	CYCGRG	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	280
BalI	TGGCCA	1 cut(s)	68
BauI	CACGAG	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	385
BceAI	ACGGC	2 cut(s)	57, 190
BcnI	CCSGG	2 cut(s)	6, 7
BfaI	CTAG	1 cut(s)	496
BfmI	CTRYAG	1 cut(s)	205
BisI	GCNGC	2 cut(s)	60, 111
BlpI	GCTNAGC	1 cut(s)	461
BlsI	GCNGC	2 cut(s)	61, 112
Bme1390I	CCNGG	2 cut(s)	6, 7
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	18, 123
BmrFI	CCNGG	2 cut(s)	6, 7
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	3 cut(s)	62, 399, 479
BmuI	ACTGGG	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	461
BpuMI	CCSGG	2 cut(s)	6, 7
BsaAI	YACGTR	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	5, 63, 81
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	437
Bse3DI	GCAATG	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	5, 63, 81
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	208, 452
BseNI	ACTGG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	6, 50
BslFI	GGGAC	2 cut(s)	22, 419
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmFI	GGGAC	2 cut(s)	22, 419
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	68
BsoBI	CYCGRG	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	361
Bsp1720I	GCTNAGC	1 cut(s)	461
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	207, 453
BspLI	GGNNCC	2 cut(s)	18, 123
BspMAI	CTGCAG	1 cut(s)	209
BspPI	GGATC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	437
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	5, 63, 81
BssMI	GATC	1 cut(s)	361
BssSI	CACGAG	1 cut(s)	328
BssT1I	CCWWGG	2 cut(s)	63, 81
Bst2BI	CACGAG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	2 cut(s)	194, 461
BstDSI	CCRYGG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 59, 65, 356
BstSCI	CCNGG	2 cut(s)	4, 5
BstSFI	CTRYAG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	484
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	295
Cfr9I	CCCGGG	1 cut(s)	5
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	5 cut(s)	64, 267, 299, 413, 466
CviJI	RGCY	6 cut(s)	62, 68, 110, 124, 177, 241
CviKI_1	RGCY	6 cut(s)	62, 68, 110, 124, 177, 241
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	2 cut(s)	194, 461
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
DraIII	CACNNNGTG	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	63, 81
Eco47I	GGWCC	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	5
EcoT14I	CCWWGG	2 cut(s)	63, 81
EcoT22I	ATGCAT	2 cut(s)	414, 426
ErhI	CCWWGG	2 cut(s)	63, 81
FaeI	CATG	5 cut(s)	67, 270, 302, 416, 469
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	2 cut(s)	22, 419
FatI	CATG	5 cut(s)	63, 266, 298, 412, 465
Fnu4HI	GCNGC	2 cut(s)	60, 111
Fsp4HI	GCNGC	2 cut(s)	60, 111
FspBI	CTAG	1 cut(s)	496
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	2 cut(s)	60, 111
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	2 cut(s)	6, 50
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	5 cut(s)	67, 270, 302, 416, 469
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	3 cut(s)	86, 101, 251
HpaII	CCGG	2 cut(s)	6, 50
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	93, 106, 197, 307
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	2 cut(s)	43, 79
HpyAV	CCTTC	3 cut(s)	153, 200, 340
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	5 cut(s)	207, 259, 412, 424, 486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 59, 65, 356
HpyF3I	CTNAG	2 cut(s)	194, 461
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	5 cut(s)	67, 270, 302, 416, 469
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	2 cut(s)	121, 334
LpnPI	CCDG	7 cut(s)	19, 63, 174, 251, 355, 378, 450
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	3 cut(s)	62, 399, 479
MaeI	CTAG	1 cut(s)	496
MaeII	ACGT	1 cut(s)	280
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	3 cut(s)	106, 418, 442
MfeI	CAATTG	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	2 cut(s)	198, 338
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	7, 252, 324, 388
Mox20I	TGGCCA	1 cut(s)	68
Mph1103I	ATGCAT	2 cut(s)	414, 426
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	2 cut(s)	290, 441
MslI	CAYNNNNRTG	1 cut(s)	271
Msp20I	TGGCCA	1 cut(s)	68
MspI	CCGG	2 cut(s)	6, 50
MspR9I	CCNGG	2 cut(s)	6, 7
MunI	CAATTG	1 cut(s)	338
Mva1269I	GAATGC	1 cut(s)	379
MwoI	GCNNNNNNNGC	4 cut(s)	50, 59, 65, 356
NciI	CCSGG	2 cut(s)	6, 7
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	5 cut(s)	67, 270, 302, 416, 469
NlaIV	GGNNCC	2 cut(s)	18, 123
NsiI	ATGCAT	2 cut(s)	414, 426
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	86, 251
PkrI	GCNGC	2 cut(s)	61, 112
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	18, 123
PspPI	GGNCC	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	290, 441
SatI	GCNGC	2 cut(s)	60, 111
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	6, 7
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	2 cut(s)	283, 290
SfaNI	GCATC	3 cut(s)	62, 399, 479
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	295
SmaI	CCCGGG	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	271
Sse9I	AATT	2 cut(s)	198, 338
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	496
StyD4I	CCNGG	2 cut(s)	4, 5
StyI	CCWWGG	2 cut(s)	63, 81
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	1 cut(s)	283
TasI	AATT	2 cut(s)	198, 338
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	86, 251
Tru1I	TTAA	2 cut(s)	290, 441
Tru9I	TTAA	2 cut(s)	290, 441
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	243, 386
TspGWI	ACGGA	2 cut(s)	26, 134
TspMI	CCCGGG	1 cut(s)	5
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	295
XmaI	CCCGGG	1 cut(s)	5
XspI	CTAG	1 cut(s)	496
Zsp2I	ATGCAT	2 cut(s)	414, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.