Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033694.1

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1779

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033694.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 238 bp

tgcccttccgaagatcataaagactggattttcagccattaatctcatatactttttcacggctggtcctgatgaggtgaaatgctggcaaattaggcggctttcaaaggctcctcaagctgcagggaccatccatactgattttgagagaggattcatttgtgctgaggtcatgaagtttgaagatctaaaggaacttggtagcgaaccagctgttaaggtatgcactatgttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

78

Amino Acids

8.73

Weight (kDa)

7.95

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	106, 183
AluBI	AGCT	2 cut(s)	120, 213
AluI	AGCT	2 cut(s)	120, 213
ApeKI	GCWGC	1 cut(s)	120
AseI	ATTAAT	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	66, 127
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	66, 127
BbvCI	CCTCAGC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	76
BfmI	CTRYAG	1 cut(s)	121
BglII	AGATCT	1 cut(s)	185
BisI	GCNGC	2 cut(s)	99, 121
BlsI	GCNGC	2 cut(s)	100, 122
Bme18I	GGWCC	2 cut(s)	66, 127
BmgT120I	GGNCC	2 cut(s)	66, 127
BmiI	GGNNCC	2 cut(s)	112, 128
Bpu10I	CCTNAGC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	29
BseGI	GGATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	13, 185
BspACI	CCGC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	158
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	112, 128
BspMAI	CTGCAG	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	13, 185
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	16, 188
BstMBI	GATC	2 cut(s)	13, 185
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 117
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	66, 127
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	6 cut(s)	36, 63, 101, 111, 120, 213
CviKI_1	RGCY	6 cut(s)	36, 63, 101, 111, 120, 213
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	2 cut(s)	15, 187
DpnII	GATC	2 cut(s)	13, 185
Eco47I	GGWCC	2 cut(s)	66, 127
FaeI	CATG	1 cut(s)	176
FaiI	YATR	7 cut(s)	18, 48, 50, 136, 174, 224, 231
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	99, 121
FokI	GGATG	1 cut(s)	117
Fsp4HI	GCNGC	2 cut(s)	99, 121
GluI	GCNGC	2 cut(s)	99, 121
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	10, 237
Hpy188III	TCNNGA	2 cut(s)	69, 173
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	123, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 117
HpyF3I	CTNAG	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	13, 185
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	6 cut(s)	10, 49, 71, 82, 109, 223
Lsp1109I	GCAGC	1 cut(s)	107
MalI	GATC	2 cut(s)	15, 187
MboI	GATC	2 cut(s)	13, 185
MboII	GAAGA	2 cut(s)	23, 195
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	1 cut(s)	91
MnlI	CCTC	4 cut(s)	68, 124, 144, 161
MseI	TTAA	2 cut(s)	40, 217
MspA1I	CMGCKG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	95, 117
NdeII	GATC	2 cut(s)	13, 185
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	2 cut(s)	112, 128
PagI	TCATGA	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	100, 122
PshBI	ATTAAT	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	112, 128
PspPI	GGNCC	2 cut(s)	66, 127
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	40, 217
SatI	GCNGC	2 cut(s)	99, 121
Sau3AI	GATC	2 cut(s)	13, 185
Sau96I	GGNCC	2 cut(s)	66, 127
SetI	ASST	5 cut(s)	79, 122, 172, 215, 223
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	66, 127
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	98
TasI	AATT	1 cut(s)	91
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	40, 217
Tru9I	TTAA	2 cut(s)	40, 217
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	146, 189
VpaK11BI	GGWCC	2 cut(s)	66, 127
VspI	ATTAAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.