Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Reverse (-)

23816675 .. 23817114

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG109900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGGCCACCGCGTTGCCCTTGGATTCTCCAAAGATCGACTCCGAAGCCGCCGACACGGAGCCAAACCCTAACCCTAATCCTTCAAACGCATTGTTCCCTGTTTCCCCAAACGGCTTTGCTGTCTGCCTTCTCAGGTACTTTGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0046983 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

49

Amino Acids

5.19

Weight (kDa)

4.05

Isoelectric Point (pI)

63.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	9, 48
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	84
AoxI	GGCC	1 cut(s)	3
BalI	TGGCCA	1 cut(s)	5
BceAI	ACGGC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	60
BmsI	GCATC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	2 cut(s)	9, 48
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstUI	CGCG	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	1 cut(s)	147
CviJI	RGCY	4 cut(s)	5, 47, 61, 114
CviKI_1	RGCY	4 cut(s)	5, 47, 61, 114
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	150
FaiI	YATR	1 cut(s)	148
FatI	CATG	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	150
HinfI	GANTC	2 cut(s)	23, 38
Hpy188I	TCNGA	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	90, 137
HpyCH4V	TGCA	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	2 cut(s)	111, 118
LweI	GCATC	1 cut(s)	133
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	32
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	148
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MvnI	CGCG	1 cut(s)	11
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	150
NlaIV	GGNNCC	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	32
SetI	ASST	1 cut(s)	137
SfaNI	GCATC	1 cut(s)	133
SgeI	CNNG	5 cut(s)	22, 31, 67, 110, 145
SsiI	CCGC	2 cut(s)	9, 48
StyI	CCWWGG	1 cut(s)	18
TaqI	TCGA	1 cut(s)	36
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	71
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.