Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

4538497 .. 4545695

Gene Structure 7199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G091100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCCTCCCAAATCTGCAAAATCTAAGGAAGCACCAGCTGAGCGACCCATCCTTGGCCGATTCTCATCTCACCTTAAGATTGGCATTGTTGGATTGCCGAATGTTGGAAAATCTACTCTTTTTAACACTCTCACAAAGTTGTCAATACCTGCTGAGAACTTCCCTTTCTGCACAATTGAACCCAATGAAGCCCGAGTCAATGTTCCCGATGAGCGATTTGACTGGCTTTGTCAATTGTACAAGCCAAAAAGCGAGGTCTCAGCTTTTTTAGAAATCCATGATATAGCCGGACTTGTTCGAGGTGCCCACGAAGGACAAGGGTTGGGCAACAGTTTCTTATCCCATATCCGTGCCGTTGATGGCATCTTTCATGTTTTACGTGCATTTGAAGATCCGGATATCATCCATGTTGATGATACTGTGGATCCTGTGAGGGATTTGGAGATTATTAGTGCAGAATTGCGCCTAAAGGATATTGAATTCATGGAGAGGAGGATAGAAGATCTTGAAAAGAGCATGAAGAGGAGCAATGAAAAGGCGTTAAAGATTGAGCATGAGCTATGCCAAAAGATCAAGGCATGGCTTGAGGATGGAAAAGATGTCCGTCTAGGGGAGTGGAAGGCTGCTGAAGTTGAGATCCTGAATACCTTTCAATTGCTAACGGCCAAGCCTGTTGTTTACTTGGTTAACATGAATGAGAAAGATTACCAAAGGAAAAAGAACAAATTCTTGCCAAAGATCCATGCTTGGGTGCAGGAACATGGAGGTGAACCGATTATTCCATTCAGCTGTGCATTAGAAAGGAATCTTGCTGATTTGCCACCAGAGGAAGCAGCAAAGTATTGTGAGCAGAACAACGTACAAAGTGCCCTTACCAAGATCATAAAGACTGGATTTTCAGCGATTAATCTCATATACTTTTTCACTGCTGGCCCTGATGAGGTGAAGTGCTGGCAAATTAGGCGGCAGACAAAAGCTCCTCAAGCTGCAGGGGCCATCCATACTGATTTCGAGAAAGGGTTTATTTGTGCTGAGGTGATGAAATTTGAAGATCTGAAGGAACTAGGCAGTGAGCCAGCTGTTAAGGCTGCTGGTAAGTACAGACAGGAGGGGAAGACATACGTGGTCCAAGATGCAGATGTGATATTTTTCAAGTTTAATGTTTCTGGGGGTGGCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

395

Amino Acids

44.45

Weight (kDa)

6.4

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	1 cut(s)	964
AclWI	GGATC	5 cut(s)	386, 419, 432, 631, 733
AcoI	YGGCCR	2 cut(s)	55, 663
AcsI	RAATTY	3 cut(s)	479, 725, 1043
AcuI	CTGAAG	2 cut(s)	648, 1076
AfaI	GTAC	3 cut(s)	239, 861, 1100
AfiI	CCNNNNNNNGG	5 cut(s)	53, 104, 610, 748, 940
AflII	CTTAAG	1 cut(s)	74
AgsI	TTSAA	7 cut(s)	179, 389, 479, 509, 653, 1049, 1153
AluBI	AGCT	7 cut(s)	38, 263, 559, 789, 977, 986, 1079
AluI	AGCT	7 cut(s)	38, 263, 559, 789, 977, 986, 1079
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	5 cut(s)	386, 419, 432, 631, 733
Ama87I	CYCGRG	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	4 cut(s)	55, 663, 931, 993
ApeKI	GCWGC	4 cut(s)	623, 833, 986, 1088
ApoI	RAATTY	3 cut(s)	479, 725, 1043
AseI	ATTAAT	1 cut(s)	906
Asp700I	GAANNNNTTC	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	932, 993, 1126
AsuHPI	GGTGA	4 cut(s)	62, 779, 955, 1048
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	1126
BaeGI	GKGCMC	2 cut(s)	307, 871
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	1121
BbvCI	CCTCAGC	1 cut(s)	1032
BbvI	GCAGC	4 cut(s)	610, 845, 973, 1075
BccI	CCATC	4 cut(s)	56, 353, 584, 1004
BceAI	ACGGC	2 cut(s)	338, 678
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	608, 1064
BfmI	CTRYAG	1 cut(s)	987
BfrI	CTTAAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	157
BglII	AGATCT	2 cut(s)	502, 1051
BisI	GCNGC	5 cut(s)	624, 834, 965, 987, 1089
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	5 cut(s)	625, 835, 966, 988, 1090
Bme18I	GGWCC	1 cut(s)	1126
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	3 cut(s)	932, 993, 1126
BmiI	GGNNCC	3 cut(s)	304, 426, 994
BmsI	GCATC	2 cut(s)	372, 1123
BpiI	GAAGAC	1 cut(s)	1121
Bpu10I	CCTNAGC	1 cut(s)	1032
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	605, 966
BsaAI	YACGTR	2 cut(s)	380, 1123
BsaBI	GATNNNNATC	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	961, 991
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 104, 610, 748, 940
Bse1I	ACTGG	2 cut(s)	227, 895
Bse3DI	GCAATG	1 cut(s)	535
Bse8I	GATNNNNATC	1 cut(s)	64
BseAI	TCCGGA	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	4 cut(s)	48, 402, 595, 996
BseJI	GATNNNNATC	1 cut(s)	64
BseLI	CCNNNNNNNGG	5 cut(s)	53, 104, 610, 748, 940
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	4 cut(s)	30, 144, 273, 1023
BseNI	ACTGG	2 cut(s)	227, 895
BseRI	GAGGAG	3 cut(s)	505, 538, 969
BseSI	GKGCMC	2 cut(s)	307, 871
BseXI	GCAGC	4 cut(s)	610, 845, 973, 1075
BsgI	GTGCAG	3 cut(s)	154, 474, 773
BshFI	GGCC	4 cut(s)	57, 665, 933, 995
BshNI	GGYRCC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	288, 395
BslI	CCNNNNNNNGG	5 cut(s)	53, 104, 610, 748, 940
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	4 cut(s)	57, 665, 933, 995
Bso31I	GGTCTC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	307, 871
Bsp13I	TCCGGA	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	964
BspANI	GGCC	4 cut(s)	57, 665, 933, 995
BspCNI	CTCAG	4 cut(s)	31, 145, 272, 1024
BspEI	TCCGGA	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	304, 426, 994
BspMAI	CTGCAG	1 cut(s)	991
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	5 cut(s)	386, 419, 432, 631, 733
BspT107I	GGYRCC	1 cut(s)	302
BspTI	CTTAAG	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	535
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	227, 895
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
BssT1I	CCWWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	332, 421
Bst6I	CTCTTC	1 cut(s)	515
BstAFI	CTTAAG	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	237
BstBAI	YACGTR	2 cut(s)	380, 1123
BstC8I	GCNNGC	3 cut(s)	931, 953, 1077
BstDEI	CTNAG	5 cut(s)	24, 39, 153, 259, 1032
BstF5I	GGATG	4 cut(s)	48, 402, 595, 996
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	8 cut(s)	394, 427, 505, 573, 639, 741, 882, 1054
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
BstMWI	GCNNNNNNNGC	4 cut(s)	961, 983, 992, 1085
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	2 cut(s)	307, 871
BstV1I	GCAGC	4 cut(s)	610, 845, 973, 1075
BstV2I	GAAGAC	1 cut(s)	1121
BstX2I	RGATCY	6 cut(s)	391, 424, 502, 636, 738, 1051
BstYI	RGATCY	6 cut(s)	391, 424, 502, 636, 738, 1051
BsuRI	GGCC	4 cut(s)	57, 665, 933, 995
BtsCI	GGATG	4 cut(s)	48, 402, 595, 996
BtsI	GCAGTG	2 cut(s)	924, 1075
BtsIMutI	CAGTG	2 cut(s)	924, 1075
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	931, 953, 1077
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	932, 993, 1126
Csp6I	GTAC	3 cut(s)	238, 860, 1099
CviQI	GTAC	3 cut(s)	238, 860, 1099
DdeI	CTNAG	5 cut(s)	24, 39, 153, 259, 1032
DpnI	GATC	8 cut(s)	393, 426, 504, 572, 638, 740, 881, 1053
DpnII	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
EaeI	YGGCCR	2 cut(s)	55, 663
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Eco130I	CCWWGG	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	1126
Eco57I	CTGAAG	2 cut(s)	648, 1076
Eco88I	CYCGRG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	479
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
Fnu4HI	GCNGC	5 cut(s)	624, 834, 965, 987, 1089
FokI	GGATG	4 cut(s)	35, 389, 602, 983
Fsp4HI	GCNGC	5 cut(s)	624, 834, 965, 987, 1089
FspBI	CTAG	2 cut(s)	608, 1064
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	5 cut(s)	624, 834, 965, 987, 1089
HaeIII	GGCC	4 cut(s)	57, 665, 933, 995
HapII	CCGG	2 cut(s)	288, 395
HhaI	GCGC	1 cut(s)	465
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	3 cut(s)	60, 195, 805
HpaI	GTTAAC	1 cut(s)	688
HpaII	CCGG	2 cut(s)	288, 395
HphI	GGTGA	4 cut(s)	62, 779, 955, 1048
Hpy166II	GTNNAC	3 cut(s)	679, 688, 770
Hpy188I	TCNGA	1 cut(s)	1056
Hpy188III	TCNNGA	5 cut(s)	206, 395, 506, 640, 1012
Hpy8I	GTNNAC	3 cut(s)	679, 688, 770
HpyAV	CCTTC	3 cut(s)	305, 613, 1051
HpyCH4III	ACNGT	2 cut(s)	332, 421
HpyCH4IV	ACGT	3 cut(s)	379, 858, 1122
HpyCH4V	TGCA	8 cut(s)	17, 171, 383, 455, 754, 794, 989, 1136
HpyF10VI	GCNNNNNNNGC	4 cut(s)	961, 983, 992, 1085
HpyF3I	CTNAG	5 cut(s)	24, 39, 153, 259, 1032
HpySE526I	ACGT	3 cut(s)	379, 858, 1122
HspAI	GCGC	1 cut(s)	463
Kpn2I	TCCGGA	1 cut(s)	394
KspAI	GTTAAC	1 cut(s)	688
Kzo9I	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
LmnI	GCTCC	2 cut(s)	525, 982
Lsp1109I	GCAGC	4 cut(s)	610, 845, 973, 1075
LweI	GCATC	2 cut(s)	372, 1123
MaeI	CTAG	2 cut(s)	608, 1064
MaeII	ACGT	3 cut(s)	379, 858, 1122
MalI	GATC	8 cut(s)	393, 426, 504, 572, 638, 740, 881, 1053
MboI	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
MboII	GAAGA	5 cut(s)	401, 512, 532, 1061, 1126
MfeI	CAATTG	3 cut(s)	174, 233, 653
MflI	RGATCY	6 cut(s)	391, 424, 502, 636, 738, 1051
MhlI	GDGCHC	2 cut(s)	307, 871
MluCI	AATT	8 cut(s)	174, 233, 458, 479, 653, 725, 957, 1043
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	2 cut(s)	70, 85
MroI	TCCGGA	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	7 cut(s)	75, 123, 542, 687, 906, 1083, 1158
MslI	CAYNNNNRTG	3 cut(s)	348, 411, 765
MspA1I	CMGCKG	3 cut(s)	38, 789, 1079
MspCI	CTTAAG	1 cut(s)	74
MspI	CCGG	2 cut(s)	288, 395
MunI	CAATTG	3 cut(s)	174, 233, 653
MwoI	GCNNNNNNNGC	4 cut(s)	961, 983, 992, 1085
NdeII	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
NlaIV	GGNNCC	3 cut(s)	304, 426, 994
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	60, 805
PkrI	GCNGC	5 cut(s)	625, 835, 966, 988, 1090
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Ppu21I	YACGTR	2 cut(s)	380, 1123
PshBI	ATTAAT	1 cut(s)	906
PspN4I	GGNNCC	3 cut(s)	304, 426, 994
PspPI	GGNCC	3 cut(s)	932, 993, 1126
PstI	CTGCAG	1 cut(s)	991
PsuI	RGATCY	6 cut(s)	391, 424, 502, 636, 738, 1051
PvuII	CAGCTG	3 cut(s)	38, 789, 1079
RsaI	GTAC	3 cut(s)	239, 861, 1100
RsaNI	GTAC	3 cut(s)	238, 860, 1099
RseI	CAYNNNNRTG	3 cut(s)	348, 411, 765
SaqAI	TTAA	7 cut(s)	75, 123, 542, 687, 906, 1083, 1158
SatI	GCNGC	5 cut(s)	624, 834, 965, 987, 1089
Sau3AI	GATC	8 cut(s)	391, 424, 502, 570, 636, 738, 879, 1051
Sau96I	GGNCC	3 cut(s)	932, 993, 1126
SchI	GAGTC	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	307, 871
SfaNI	GCATC	2 cut(s)	372, 1123
SfcI	CTRYAG	1 cut(s)	987
SinI	GGWCC	1 cut(s)	1126
SmiMI	CAYNNNNRTG	3 cut(s)	348, 411, 765
SmlI	CTYRAG	3 cut(s)	74, 584, 981
SmoI	CTYRAG	3 cut(s)	74, 584, 981
Sse9I	AATT	8 cut(s)	174, 233, 458, 479, 653, 725, 957, 1043
SsiI	CCGC	1 cut(s)	964
SspMI	CTAG	2 cut(s)	608, 1064
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	332, 421
TaiI	ACGT	3 cut(s)	382, 861, 1125
TaqI	TCGA	2 cut(s)	298, 1011
TasI	AATT	8 cut(s)	174, 233, 458, 479, 653, 725, 957, 1043
TatI	WGTACW	2 cut(s)	237, 1098
TauI	GCSGC	1 cut(s)	967
TfiI	GAWTC	2 cut(s)	60, 805
Tru1I	TTAA	7 cut(s)	75, 123, 542, 687, 906, 1083, 1158
Tru9I	TTAA	7 cut(s)	75, 123, 542, 687, 906, 1083, 1158
TscAI	CASTG	2 cut(s)	931, 1075
TseI	GCWGC	4 cut(s)	623, 833, 986, 1088
TspDTI	ATGAA	7 cut(s)	201, 359, 472, 533, 546, 707, 1055
TspGWI	ACGGA	2 cut(s)	338, 593
TspRI	CASTG	2 cut(s)	931, 1075
Vha464I	CTTAAG	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	1126
VspI	ATTAAT	1 cut(s)	906
XapI	RAATTY	3 cut(s)	479, 725, 1043
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	2 cut(s)	608, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.