Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

6640511 .. 6646137

Gene Structure 5627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGATCTTGGATCTACAGCTCAAGGCATGGCTTGAGGATGGAAAAGATATCCGTCTAGGGGACTGGAAAGCTGCTGATGTCGAGATCCTGAATACCTTTCAATTGCTAACAGCTAAGCCTGTTGTTTACTTGGTGAAATGCTGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGTTGATTCAAATAGTTTTTGATGAAGGAAACGGTAGCAGTAGTGGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

91

Amino Acids

10.21

Weight (kDa)

5.56

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YchF-GTPase_C	PF06071	45 - 78	1.3e-12	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	2 cut(s)	18, 79
AcoI	YGGCCR	1 cut(s)	268
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	101, 162, 233
AluBI	AGCT	4 cut(s)	19, 71, 113, 176
AluI	AGCT	4 cut(s)	19, 71, 113, 176
AlwI	GGATC	2 cut(s)	18, 79
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	71, 176
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	58, 163
BccI	CCATC	2 cut(s)	32, 194
BfaI	CTAG	2 cut(s)	56, 274
BfmI	CTRYAG	2 cut(s)	14, 177
BisI	GCNGC	3 cut(s)	72, 155, 177
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	3 cut(s)	73, 156, 178
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	168, 184
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	3 cut(s)	5, 53, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	43, 186
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	58, 163
BshFI	GGCC	1 cut(s)	270
BslFI	GGGAC	2 cut(s)	74, 196
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmFI	GGGAC	2 cut(s)	74, 196
BsnI	GGCC	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	3, 10, 84
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	168, 184
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	2 cut(s)	18, 79
BsrI	ACTGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	3, 10, 84
Bst4CI	ACNGT	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	114, 222
BstF5I	GGATG	2 cut(s)	43, 186
BstKTI	GATC	3 cut(s)	6, 13, 87
BstMBI	GATC	3 cut(s)	3, 10, 84
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 173, 267
BstSFI	CTRYAG	2 cut(s)	14, 177
BstV1I	GCAGC	2 cut(s)	58, 163
BstX2I	RGATCY	2 cut(s)	10, 84
BstYI	RGATCY	2 cut(s)	10, 84
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	43, 186
Cac8I	GCNNGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	183
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	9 cut(s)	19, 31, 71, 113, 118, 157, 167, 176, 270
CviKI_1	RGCY	9 cut(s)	19, 31, 71, 113, 118, 157, 167, 176, 270
DdeI	CTNAG	2 cut(s)	114, 222
DpnI	GATC	3 cut(s)	5, 12, 86
DpnII	GATC	3 cut(s)	3, 10, 84
EaeI	YGGCCR	1 cut(s)	268
Eco32I	GATATC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	49
FaeI	CATG	1 cut(s)	30
FaiI	YATR	2 cut(s)	28, 192
FaqI	GGGAC	2 cut(s)	74, 196
FatI	CATG	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	72, 155, 177
FokI	GGATG	2 cut(s)	50, 173
Fsp4HI	GCNGC	3 cut(s)	72, 155, 177
FspBI	CTAG	2 cut(s)	56, 274
GluI	GCNGC	3 cut(s)	72, 155, 177
HaeIII	GGCC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	30
HinfI	GANTC	2 cut(s)	210, 229
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	82, 88
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 173, 267
HpyF3I	CTNAG	2 cut(s)	114, 222
Hsp92II	CATG	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	3, 10, 84
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	5 cut(s)	49, 101, 127, 132, 165
Lsp1109I	GCAGC	2 cut(s)	58, 163
MaeI	CTAG	2 cut(s)	56, 274
MalI	GATC	3 cut(s)	5, 12, 86
MboI	GATC	3 cut(s)	3, 10, 84
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	2 cut(s)	10, 84
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	2 cut(s)	101, 147
MluNI	TGGCCA	1 cut(s)	270
MnlI	CCTC	3 cut(s)	28, 180, 200
Mox20I	TGGCCA	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	270
MunI	CAATTG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	151, 173, 267
NdeII	GATC	3 cut(s)	3, 10, 84
NlaIII	CATG	1 cut(s)	30
NlaIV	GGNNCC	2 cut(s)	168, 184
PfeI	GAWTC	2 cut(s)	210, 229
PkrI	GCNGC	3 cut(s)	73, 156, 178
PspN4I	GGNNCC	2 cut(s)	168, 184
PspPI	GGNCC	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	10, 84
SatI	GCNGC	3 cut(s)	72, 155, 177
Sau3AI	GATC	3 cut(s)	3, 10, 84
Sau96I	GGNCC	1 cut(s)	183
SetI	ASST	5 cut(s)	21, 73, 98, 115, 178
SfcI	CTRYAG	2 cut(s)	14, 177
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	3 cut(s)	20, 32, 171
SmoI	CTYRAG	3 cut(s)	20, 32, 171
Sse9I	AATT	2 cut(s)	101, 147
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	2 cut(s)	56, 274
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	101, 147
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	210, 229
TseI	GCWGC	2 cut(s)	71, 176
TspDTI	ATGAA	2 cut(s)	202, 261
TspGWI	ACGGA	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	183
XspI	CTAG	2 cut(s)	56, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.