Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

2051946 .. 2058865

Gene Structure 6920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0032000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGTCGACAAAGTATCAGCACGCTTGGCGGCTACACTGTCTATCTCGGAGGAGGGGAGGACGTCTTTTGGTCCTGTCGGCACCGCCGTGGTTTTAACCCACCAATTTGCAGACTGCTCTATGTTATGGCGAAGAGGAGCTCCAGTCCTGAGGCGTTCACCGTTTGGGGCTTCTAGAACAGCTCAAGAGAGGGTTGAGAATTGGATTCAAATTATGCTAGATCAAAGATTGGATTTCACTTTTGGGCCTGAGTTTTTGCTGAAGTTGTATCTAGCTGGAGCTATTGGTGGCTCAGTCTTTTACTTGGTGCACCATGCCTTCCTGGCTGCATCATTGAAGAATCAACCATTTGGGATTATGGACGCTTCTAAGGCCCTAATATTGGGGGCAAGCGGTGCTGTTAATGGCATCATGTTGCTTGATATATTCCTTCACCCCACAGCTACCCTCTACTTTGATTTTATCATACCAGTTCCTGCCATGCTGCTGGGAATCTTTCTAATTGGAAAGGATATCTTAAGAATAATGGAGGGAAACAGTCAGATCTCAGGATCTGCACACTGGGGTGGTGCGGCAGCAGCAGCCATAGCCTGGGCAAGACTTCGAAAGGGGCGTGGTTTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

208

Amino Acids

22.51

Weight (kDa)

9.72

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhomboid	PF01694	68 - 199	4.4e-12	Rhomboid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	591
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	4 cut(s)	29, 84, 393, 572
AclWI	GGATC	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	382, 591
AflII	CTTAAG	1 cut(s)	517
AgsI	TTSAA	2 cut(s)	209, 337
AjnI	CCWGG	2 cut(s)	321, 590
AleI	CACNNNNGTG	2 cut(s)	86, 564
AluBI	AGCT	5 cut(s)	140, 182, 275, 281, 443
AluI	AGCT	5 cut(s)	140, 182, 275, 281, 443
Alw21I	GWGCWC	2 cut(s)	142, 312
Alw44I	GTGCAC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	559
AlwNI	CAGNNNCTG	2 cut(s)	476, 554
AoxI	GGCC	2 cut(s)	245, 372
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	5 cut(s)	326, 484, 575, 578, 581
AspS9I	GGNCC	3 cut(s)	71, 245, 373
AsuHPI	GGTGA	2 cut(s)	150, 425
AsuII	TTCGAA	1 cut(s)	604
AvaII	GGWCC	1 cut(s)	71
AxyI	CCTNAGG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	142
Bbv12I	GWGCWC	2 cut(s)	142, 312
BbvI	GCAGC	5 cut(s)	313, 471, 587, 590, 593
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	323, 592
BfaI	CTAG	4 cut(s)	174, 218, 272, 625
BfrI	CTTAAG	1 cut(s)	517
BglI	GCCNNNNNGGC	1 cut(s)	323
BglII	AGATCT	1 cut(s)	543
BisI	GCNGC	7 cut(s)	30, 327, 485, 573, 576, 579, 582
BlsI	GCNGC	7 cut(s)	31, 328, 486, 574, 577, 580, 583
Bme1390I	CCNGG	2 cut(s)	323, 592
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	71, 245, 373
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	2 cut(s)	323, 592
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	2 cut(s)	338, 417
BmuI	ACTGGG	1 cut(s)	571
BpmI	CTGGAG	2 cut(s)	126, 297
Bpu14I	TTCGAA	1 cut(s)	604
BpuEI	CTTGAG	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	87, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 591
Bse1I	ACTGG	3 cut(s)	143, 470, 566
Bse21I	CCTNAGG	1 cut(s)	149
BseBI	CCWGG	2 cut(s)	323, 592
BseDI	CCNNGG	2 cut(s)	87, 591
BseLI	CCNNNNNNNGG	2 cut(s)	382, 591
BseMII	CTCAG	4 cut(s)	140, 240, 306, 561
BseNI	ACTGG	3 cut(s)	143, 470, 566
BseRI	GAGGAG	2 cut(s)	65, 150
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	5 cut(s)	313, 471, 587, 590, 593
BseYI	CCCAGC	1 cut(s)	487
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	2 cut(s)	247, 374
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	142, 312
BslI	CCNNNNNNNGG	2 cut(s)	382, 591
BsnI	GGCC	2 cut(s)	247, 374
Bsp119I	TTCGAA	1 cut(s)	604
Bsp1286I	GDGCHC	2 cut(s)	142, 312
Bsp143I	GATC	3 cut(s)	220, 543, 551
BspACI	CCGC	4 cut(s)	29, 84, 393, 572
BspANI	GGCC	2 cut(s)	247, 374
BspCNI	CTCAG	4 cut(s)	141, 241, 305, 560
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	559
BspT104I	TTCGAA	1 cut(s)	604
BspT107I	GGYRCC	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	517
BsrI	ACTGG	3 cut(s)	143, 470, 566
BssECI	CCNNGG	2 cut(s)	87, 591
BssMI	GATC	3 cut(s)	220, 543, 551
BssNI	GRCGYC	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	323, 592
Bst4CI	ACNGT	3 cut(s)	39, 162, 539
Bst6I	CTCTTC	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	517
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstBI	TTCGAA	1 cut(s)	604
BstC8I	GCNNGC	2 cut(s)	22, 391
BstDEI	CTNAG	5 cut(s)	149, 249, 292, 369, 547
BstDSI	CCRYGG	1 cut(s)	87
BstKTI	GATC	3 cut(s)	223, 546, 554
BstMBI	GATC	3 cut(s)	220, 543, 551
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 323, 371, 395, 578, 581, 587
BstNI	CCWGG	2 cut(s)	323, 592
BstSCI	CCNGG	2 cut(s)	321, 590
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	5 cut(s)	313, 471, 587, 590, 593
BstX2I	RGATCY	2 cut(s)	543, 551
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	2 cut(s)	543, 551
Bsu36I	CCTNAGG	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	247, 374
BtgI	CCRYGG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	35, 559
Cac8I	GCNNGC	2 cut(s)	22, 391
CaiI	CAGNNNCTG	2 cut(s)	476, 554
Cfr13I	GGNCC	3 cut(s)	71, 245, 373
CseI	GACGC	1 cut(s)	371
CviAII	CATG	3 cut(s)	314, 412, 481
DdeI	CTNAG	5 cut(s)	149, 249, 292, 369, 547
DpnI	GATC	3 cut(s)	222, 545, 553
DpnII	GATC	3 cut(s)	220, 543, 551
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	281
Eco81I	CCTNAGG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	321, 590
EcoRV	GATATC	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	3 cut(s)	317, 415, 484
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	3 cut(s)	313, 411, 480
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	7 cut(s)	30, 327, 485, 573, 576, 579, 582
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	7 cut(s)	30, 327, 485, 573, 576, 579, 582
FspBI	CTAG	4 cut(s)	174, 218, 272, 625
GluI	GCNGC	7 cut(s)	30, 327, 485, 573, 576, 579, 582
GsaI	CCCAGC	1 cut(s)	491
GsuI	CTGGAG	2 cut(s)	126, 297
HaeIII	GGCC	2 cut(s)	247, 374
HgaI	GACGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	317, 415, 484
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	3 cut(s)	205, 340, 492
HphI	GGTGA	2 cut(s)	150, 425
Hpy166II	GTNNAC	3 cut(s)	7, 158, 310
Hpy188I	TCNGA	2 cut(s)	49, 543
Hpy188III	TCNNGA	4 cut(s)	148, 174, 185, 549
Hpy8I	GTNNAC	3 cut(s)	7, 158, 310
HpyAV	CCTTC	2 cut(s)	328, 440
HpyCH4III	ACNGT	3 cut(s)	39, 162, 539
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	4 cut(s)	110, 310, 329, 557
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 323, 371, 395, 578, 581, 587
HpyF3I	CTNAG	5 cut(s)	149, 249, 292, 369, 547
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	3 cut(s)	317, 415, 484
Kzo9I	GATC	3 cut(s)	220, 543, 551
LmnI	GCTCC	3 cut(s)	137, 145, 278
Lsp1109I	GCAGC	5 cut(s)	313, 471, 587, 590, 593
LweI	GCATC	2 cut(s)	338, 417
MaeI	CTAG	4 cut(s)	174, 218, 272, 625
MaeII	ACGT	1 cut(s)	62
MalI	GATC	3 cut(s)	222, 545, 553
MboI	GATC	3 cut(s)	220, 543, 551
MboII	GAAGA	2 cut(s)	144, 349
MflI	RGATCY	2 cut(s)	543, 551
MhlI	GDGCHC	2 cut(s)	142, 312
MluCI	AATT	4 cut(s)	104, 199, 210, 501
MnlI	CCTC	8 cut(s)	43, 46, 51, 128, 144, 183, 458, 523
MseI	TTAA	3 cut(s)	95, 402, 518
MslI	CAYNNNNRTG	2 cut(s)	86, 564
MspCI	CTTAAG	1 cut(s)	517
MspR9I	CCNGG	2 cut(s)	323, 592
MvaI	CCWGG	2 cut(s)	323, 592
MwoI	GCNNNNNNNGC	7 cut(s)	26, 323, 371, 395, 578, 581, 587
NdeII	GATC	3 cut(s)	220, 543, 551
NlaIII	CATG	3 cut(s)	317, 415, 484
NlaIV	GGNNCC	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	604
OliI	CACNNNNGTG	2 cut(s)	86, 564
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 610
PfeI	GAWTC	3 cut(s)	205, 340, 492
PflMI	CCANNNNNTGG	1 cut(s)	591
PkrI	GCNGC	7 cut(s)	31, 328, 486, 574, 577, 580, 583
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	321, 590
PspFI	CCCAGC	1 cut(s)	487
PspGI	CCWGG	2 cut(s)	321, 590
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	3 cut(s)	71, 245, 373
PstNI	CAGNNNCTG	2 cut(s)	476, 554
PsuI	RGATCY	2 cut(s)	543, 551
RseI	CAYNNNNRTG	2 cut(s)	86, 564
SacI	GAGCTC	1 cut(s)	142
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	3 cut(s)	95, 402, 518
SatI	GCNGC	7 cut(s)	30, 327, 485, 573, 576, 579, 582
Sau3AI	GATC	3 cut(s)	220, 543, 551
Sau96I	GGNCC	3 cut(s)	71, 245, 373
ScrFI	CCNGG	2 cut(s)	323, 592
SduI	GDGCHC	2 cut(s)	142, 312
SetI	ASST	6 cut(s)	65, 142, 184, 277, 283, 445
SfaNI	GCATC	2 cut(s)	338, 417
SfuI	TTCGAA	1 cut(s)	604
SinI	GGWCC	1 cut(s)	71
SmiMI	CAYNNNNRTG	2 cut(s)	86, 564
SmlI	CTYRAG	2 cut(s)	183, 517
SmoI	CTYRAG	2 cut(s)	183, 517
Sse9I	AATT	4 cut(s)	104, 199, 210, 501
SsiI	CCGC	4 cut(s)	29, 84, 393, 572
SspI	AATATT	1 cut(s)	381
SspMI	CTAG	4 cut(s)	174, 218, 272, 625
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	321, 590
TaaI	ACNGT	3 cut(s)	39, 162, 539
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	6, 604
TasI	AATT	4 cut(s)	104, 199, 210, 501
TauI	GCSGC	2 cut(s)	32, 575
TfiI	GAWTC	3 cut(s)	205, 340, 492
Tru1I	TTAA	3 cut(s)	95, 402, 518
Tru9I	TTAA	3 cut(s)	95, 402, 518
TscAI	CASTG	2 cut(s)	42, 566
TseI	GCWGC	5 cut(s)	326, 484, 575, 578, 581
TspRI	CASTG	2 cut(s)	42, 566
Van91I	CCANNNNNTGG	1 cut(s)	591
Vha464I	CTTAAG	1 cut(s)	517
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	71
XbaI	TCTAGA	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	4 cut(s)	174, 218, 272, 625
ZraI	GACGTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.