Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

21714138 .. 21718481

Gene Structure 4344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG230100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGGAGCAGTCATTACTCTGTCATTACATCCGAAGCTTGCAACAGAAGGAGTTCCTAGGAAAATGGTCCATTAGAATCTCCTACTTGCATTTGAAAAAGCAAGTGAACGTTCTAGATTTTGAAACTCGTCAAAAGACGCAAACCAGAATTATCTGCAGAGAACTTGCTGACAACTACTGCTTTTACCAGCCTCAATATGATTCATTGCAAGGGGTATGGGAATGGGCACGTAAGACCTTAATGGACCATGCTTCGGATAAGCGAGAACATATTTACACGAGGGAGCAGCAGGAGAAGGCACAAACTGCTGATCCTCTCTGGAATGCCTCCCAATGTGAGATGGTTCATTATGGGAAGATGCATGATACTTGGATTTACAATGCTCAGGAGCTACTGCATCAGATTTTCATAGCAAACATTGGAAACTTAACTCAAAAGATTGATGATGCTGAAGCAGAACCTATGCTAGATGGGTCTTCTAGTATTGAATATAGATTCATTATGTGCCCGGAGTTCATGAACTTGGAGCCTGGATCAACTATTAAGGAGATGATGATCTGGAAAAACAAGTGGTGTGAAGCTATGAATTGGTGTAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000719 GO:0003674 GO:0003824 GO:0003904 GO:0003913 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051716 GO:0071704 GO:0071949 GO:0090304 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_photolyase

Protein Analysis

201

Amino Acids

24.03

Weight (kDa)

5.67

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	111
AclWI	GGATC	2 cut(s)	308, 544
AcuI	CTGAAG	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	3 cut(s)	97, 125, 491
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	3 cut(s)	39, 394, 584
AluI	AGCT	3 cut(s)	39, 394, 584
AlwI	GGATC	2 cut(s)	308, 544
ApeKI	GCWGC	1 cut(s)	289
Asp700I	GAANNNNTTC	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	69, 247
AsuC2I	CCSGG	1 cut(s)	512
AvaII	GGWCC	2 cut(s)	69, 247
AvrII	CCTAGG	1 cut(s)	58
BaeGI	GKGCMC	2 cut(s)	232, 512
BauI	CACGAG	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	2 cut(s)	337, 467
BciT130I	CCWGG	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	512
BfaI	CTAG	4 cut(s)	59, 116, 470, 483
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	1 cut(s)	290
BlnI	CCTAGG	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	291
Bme1390I	CCNGG	2 cut(s)	512, 534
Bme18I	GGWCC	2 cut(s)	69, 247
BmgT120I	GGNCC	2 cut(s)	69, 247
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	2 cut(s)	512, 534
BmsI	GCATC	3 cut(s)	351, 409, 439
BpiI	GAAGAC	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	512
BsaAI	YACGTR	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	401
BseSI	GKGCMC	2 cut(s)	232, 512
BseXI	GCAGC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	232, 512
Bsp143I	GATC	3 cut(s)	313, 536, 558
BspCNI	CTCAG	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	519
BspLI	GGNNCC	1 cut(s)	531
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	2 cut(s)	308, 544
BsrDI	GCAATG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	3 cut(s)	313, 536, 558
BssSI	CACGAG	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	3 cut(s)	316, 539, 561
BstMBI	GATC	3 cut(s)	313, 536, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	2 cut(s)	510, 532
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	2 cut(s)	232, 512
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	41
CciI	TCATGA	1 cut(s)	519
Cfr13I	GGNCC	2 cut(s)	69, 247
CseI	GACGC	1 cut(s)	148
CviAII	CATG	3 cut(s)	251, 365, 520
CviJI	RGCY	5 cut(s)	39, 193, 394, 532, 584
CviKI_1	RGCY	5 cut(s)	39, 193, 394, 532, 584
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	3 cut(s)	315, 538, 560
DpnII	GATC	3 cut(s)	313, 536, 558
Eco130I	CCWWGG	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	69, 247
Eco57I	CTGAAG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	3 cut(s)	254, 368, 523
FatI	CATG	3 cut(s)	250, 364, 519
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	4 cut(s)	59, 116, 470, 483
GluI	GCNGC	1 cut(s)	290
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	254, 368, 523
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	3 cut(s)	78, 203, 498
HpaII	CCGG	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	35, 259, 405
Hpy188III	TCNNGA	5 cut(s)	116, 322, 389, 520, 562
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	43, 292
HpyCH4IV	ACGT	2 cut(s)	111, 232
HpyCH4V	TGCA	6 cut(s)	43, 91, 159, 211, 364, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	2 cut(s)	111, 232
Hsp92II	CATG	3 cut(s)	254, 368, 523
Kzo9I	GATC	3 cut(s)	313, 536, 558
LmnI	GCTCC	4 cut(s)	7, 286, 391, 529
LpnPI	CCDG	9 cut(s)	160, 203, 278, 307, 374, 519, 525, 546, 547
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	3 cut(s)	351, 409, 439
MaeI	CTAG	4 cut(s)	59, 116, 470, 483
MaeII	ACGT	2 cut(s)	111, 232
MalI	GATC	3 cut(s)	315, 538, 560
MboI	GATC	3 cut(s)	313, 536, 558
MboII	GAAGA	2 cut(s)	370, 471
MhlI	GDGCHC	2 cut(s)	232, 512
MluCI	AATT	2 cut(s)	150, 589
MnlI	CCTC	4 cut(s)	204, 276, 327, 340
Mph1103I	ATGCAT	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	3 cut(s)	242, 431, 546
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	2 cut(s)	512, 534
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	3 cut(s)	313, 536, 558
NlaIII	CATG	3 cut(s)	254, 368, 523
NlaIV	GGNNCC	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	366
PagI	TCATGA	1 cut(s)	519
PctI	GAATGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	78, 203, 498
PkrI	GCNGC	1 cut(s)	291
Ppu21I	YACGTR	1 cut(s)	233
Psp1406I	AACGTT	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	2 cut(s)	69, 247
PstI	CTGCAG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	242, 431, 546
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	3 cut(s)	313, 536, 558
Sau96I	GGNCC	2 cut(s)	69, 247
ScrFI	CCNGG	2 cut(s)	512, 534
SduI	GDGCHC	2 cut(s)	232, 512
SetI	ASST	7 cut(s)	41, 114, 235, 242, 396, 466, 586
SfaNI	GCATC	3 cut(s)	351, 409, 439
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	2 cut(s)	69, 247
Sse9I	AATT	2 cut(s)	150, 589
SspMI	CTAG	4 cut(s)	59, 116, 470, 483
StyD4I	CCNGG	2 cut(s)	510, 532
StyI	CCWWGG	1 cut(s)	58
TaiI	ACGT	2 cut(s)	114, 235
TasI	AATT	2 cut(s)	150, 589
TfiI	GAWTC	3 cut(s)	78, 203, 498
Tru1I	TTAA	3 cut(s)	242, 431, 546
Tru9I	TTAA	3 cut(s)	242, 431, 546
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	7 cut(s)	195, 338, 400, 490, 508, 536, 602
VpaK11BI	GGWCC	2 cut(s)	69, 247
XbaI	TCTAGA	1 cut(s)	115
XmaJI	CCTAGG	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	4 cut(s)	59, 116, 470, 483
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.