Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

11855318 .. 11861437

Gene Structure 6120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG125700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCCTCCCAAGTCTGCAAAAGGCAAGGAAGCCCCAGCTGAGCGACCCATCCTCGGCCGATTCTCATCTCACCTCAAGATTGGAATCGTTGGATTGCCGAATGTTGGAAAATCTACTCTTTTCAACACGCTCACGAAGTTGTCGATACCCGCTGAGAACTTCCCTTTCTGCACAATTGAACCCAATGAAGCCAGGGTCAACATTCCTGATGAGCGGTTTGACTGGCTTTGCCAATTGTACAAGCCGAAAAGCGCGGTATCAGCCTTTTTGGAAATCCATGATATAGCTGGACTTGTTCGTGGTGCTCATGAAGGACAAGGGTTGGGCAACAGTTTCTTATCCCATATCCGTGCTGTTGATGGCATTTTTCATGTTTTACGTGCATTTGAAGATCCGGATATCATCCATGTCGATGATACTGTGGATCCTGTGAGGGATTTAGAGATTATCAGTGCAGAATTGCGTCTTAAGGACATTGAATTCATGGAAAGGAGGATAGAGGATGTTGAAAAGAGCATGAAGAGGAGCAATGACAAGCAGCTAAAAGTAGAGCATGAACTTTGTGGAAGGGTTAACATGAATGAGAGAGATTACCAAAGGAAGAAGAATAAGTTCTTGCCGAAGATCCATGCATGGGTGCAGGAACATGGAGGTGAGAAAATTATTCCATTCAGCTGTGCACTGGAAAGGAATCTTGCTGATTTGCCACCAGATGAAGCAGCAAAGTATTGTGAGGAGAACAAAGTGGAATGTGCCCTTCCGAAGATCATAAAGACTGGATTTTCAGCCATTAATCTCATATACTTTTTCACGGCTGGTCCTGATGAGGTGAAATGCTGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGGTCATGAAGTTTGAAGATCTAAAGGAACTTGGTAGCGAACCAGCTGTTAAGGCTGCCGGTAAGTACAGACAAGAAGGGAAGACATACGTGGTCCAAGATGGTGACATAATATTCTTCAAGTTCAATGTTTCTGGAGGTGGGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

356

Amino Acids

40.11

Weight (kDa)

6.81

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	26 - 136	3.4e-20	50S ribosome-binding GTPase
FeoB_N	PF02421	26 - 72	2.6e-07	Ferrous iron transport protein B
YchF-GTPase_C	PF06071	266 - 349	4.3e-38	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	214
AccII	CGCG	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	4 cut(s)	150, 214, 254, 850
AclWI	GGATC	4 cut(s)	386, 419, 432, 619
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	479
AfaI	GTAC	2 cut(s)	239, 986
AfiI	CCNNNNNNNGG	3 cut(s)	53, 104, 634
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	9 cut(s)	124, 179, 389, 479, 509, 858, 935, 1039, 1045
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	6 cut(s)	38, 287, 541, 675, 872, 965
AluI	AGCT	6 cut(s)	38, 287, 541, 675, 872, 965
Alw21I	GWGCWC	2 cut(s)	307, 682
Alw44I	GTGCAC	1 cut(s)	678
AlwI	GGATC	4 cut(s)	386, 419, 432, 619
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	1 cut(s)	55
ApaLI	GTGCAC	1 cut(s)	678
ApeKI	GCWGC	4 cut(s)	538, 719, 872, 974
ApoI	RAATTY	1 cut(s)	479
AseI	ATTAAT	1 cut(s)	792
Asp700I	GAANNNNTTC	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	3 cut(s)	818, 879, 1012
AsuHPI	GGTGA	4 cut(s)	62, 665, 841, 1034
AvaII	GGWCC	3 cut(s)	818, 879, 1012
BaeGI	GKGCMC	2 cut(s)	682, 757
BamHI	GGATCC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	1007
Bbv12I	GWGCWC	2 cut(s)	307, 682
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	4 cut(s)	550, 731, 859, 961
BccI	CCATC	4 cut(s)	56, 353, 890, 1013
BceAI	ACGGC	1 cut(s)	828
BciT130I	CCWGG	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	873
BfrI	CTTAAG	1 cut(s)	467
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	5 cut(s)	539, 720, 851, 873, 975
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	5 cut(s)	540, 721, 852, 874, 976
Bme1390I	CCNGG	1 cut(s)	193
Bme18I	GGWCC	3 cut(s)	818, 879, 1012
BmgT120I	GGNCC	3 cut(s)	818, 879, 1012
BmiI	GGNNCC	3 cut(s)	426, 864, 880
BmrFI	CCNGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	1007
Bpu10I	CCTNAGC	1 cut(s)	918
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	59, 852
BsaAI	YACGTR	2 cut(s)	380, 1009
BsaBI	GATNNNNATC	2 cut(s)	64, 83
BsaJI	CCNNGG	2 cut(s)	52, 192
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 104, 634
Bse118I	RCCGGY	1 cut(s)	977
Bse1I	ACTGG	3 cut(s)	227, 687, 781
Bse3DI	GCAATG	1 cut(s)	535
Bse8I	GATNNNNATC	2 cut(s)	64, 83
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	52, 192
BseGI	GGATG	4 cut(s)	48, 402, 508, 882
BseJI	GATNNNNATC	2 cut(s)	64, 83
BseLI	CCNNNNNNNGG	3 cut(s)	53, 104, 634
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	30, 144, 909
BseNI	ACTGG	3 cut(s)	227, 687, 781
BseRI	GAGGAG	3 cut(s)	538, 749, 855
BseSI	GKGCMC	2 cut(s)	682, 757
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	4 cut(s)	550, 731, 859, 961
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	3 cut(s)	154, 474, 659
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	57
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	307, 682
BsiSI	CCGG	2 cut(s)	395, 978
BslFI	GGGAC	1 cut(s)	892
BslI	CCNNNNNNNGG	3 cut(s)	53, 104, 634
BsmFI	GGGAC	1 cut(s)	892
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	3 cut(s)	307, 682, 757
Bsp13I	TCCGGA	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	391, 424, 624, 765, 937
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	4 cut(s)	150, 214, 254, 850
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	3 cut(s)	31, 145, 910
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	2 cut(s)	307, 924
BspLI	GGNNCC	3 cut(s)	426, 864, 880
BspMAI	CTGCAG	1 cut(s)	877
BspPI	GGATC	4 cut(s)	386, 419, 432, 619
BspTI	CTTAAG	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	977
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	227, 687, 781
BssAI	RCCGGY	1 cut(s)	977
BssECI	CCNNGG	2 cut(s)	52, 192
BssMI	GATC	5 cut(s)	391, 424, 624, 765, 937
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	332, 421
Bst6I	CTCTTC	1 cut(s)	515
BstAFI	CTTAAG	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	237
BstBAI	YACGTR	2 cut(s)	380, 1009
BstC8I	GCNNGC	1 cut(s)	839
BstDEI	CTNAG	3 cut(s)	39, 153, 918
BstF5I	GGATG	4 cut(s)	48, 402, 508, 882
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	5 cut(s)	394, 427, 627, 768, 940
BstMBI	GATC	5 cut(s)	391, 424, 624, 765, 937
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 847, 869, 971
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	2 cut(s)	682, 757
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	4 cut(s)	550, 731, 859, 961
BstV2I	GAAGAC	1 cut(s)	1007
BstX2I	RGATCY	4 cut(s)	391, 424, 624, 937
BstYI	RGATCY	4 cut(s)	391, 424, 624, 937
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	4 cut(s)	48, 402, 508, 882
BtsIMutI	CAGTG	2 cut(s)	457, 680
Cac8I	GCNNGC	1 cut(s)	839
CciI	TCATGA	2 cut(s)	307, 924
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	977
Cfr13I	GGNCC	3 cut(s)	818, 879, 1012
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	238, 985
CviQI	GTAC	2 cut(s)	238, 985
DdeI	CTNAG	3 cut(s)	39, 153, 918
DpnI	GATC	5 cut(s)	393, 426, 626, 767, 939
DpnII	GATC	5 cut(s)	391, 424, 624, 765, 937
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
EclXI	CGGCCG	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	3 cut(s)	818, 879, 1012
Eco52I	CGGCCG	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	191
EcoRV	GATATC	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	634
FaqI	GGGAC	1 cut(s)	892
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	5 cut(s)	539, 720, 851, 873, 975
FokI	GGATG	4 cut(s)	35, 389, 515, 869
Fsp4HI	GCNGC	5 cut(s)	539, 720, 851, 873, 975
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	5 cut(s)	539, 720, 851, 873, 975
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	2 cut(s)	395, 978
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	2 cut(s)	199, 574
HindII	GTYRAC	2 cut(s)	199, 574
HinfI	GANTC	4 cut(s)	60, 84, 691, 906
HpaI	GTTAAC	1 cut(s)	574
HpaII	CCGG	2 cut(s)	395, 978
HphI	GGTGA	4 cut(s)	62, 665, 841, 1034
Hpy166II	GTNNAC	3 cut(s)	199, 574, 680
Hpy188I	TCNGA	1 cut(s)	762
Hpy188III	TCNNGA	8 cut(s)	76, 133, 206, 308, 395, 821, 925, 1053
Hpy8I	GTNNAC	3 cut(s)	199, 574, 680
HpyAV	CCTTC	4 cut(s)	305, 561, 767, 989
HpyCH4III	ACNGT	2 cut(s)	332, 421
HpyCH4IV	ACGT	2 cut(s)	379, 1008
HpyCH4V	TGCA	8 cut(s)	17, 171, 383, 455, 632, 640, 680, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 847, 869, 971
HpyF3I	CTNAG	3 cut(s)	39, 153, 918
HpySE526I	ACGT	2 cut(s)	379, 1008
HspAI	GCGC	1 cut(s)	252
Kpn2I	TCCGGA	1 cut(s)	394
KspAI	GTTAAC	1 cut(s)	574
Kzo9I	GATC	5 cut(s)	391, 424, 624, 765, 937
LmnI	GCTCC	2 cut(s)	525, 868
Lsp1109I	GCAGC	4 cut(s)	550, 731, 859, 961
MaeII	ACGT	2 cut(s)	379, 1008
MaeIII	GTNAC	1 cut(s)	1022
MalI	GATC	5 cut(s)	393, 426, 626, 767, 939
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	5 cut(s)	391, 424, 624, 765, 937
MboII	GAAGA	9 cut(s)	401, 532, 613, 616, 634, 775, 947, 1012, 1027
MfeI	CAATTG	2 cut(s)	174, 233
MflI	RGATCY	4 cut(s)	391, 424, 624, 937
MhlI	GDGCHC	3 cut(s)	307, 682, 757
MluCI	AATT	6 cut(s)	174, 233, 458, 479, 660, 843
MmeI	TCCRAC	2 cut(s)	70, 85
Mph1103I	ATGCAT	1 cut(s)	634
MroI	TCCGGA	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	4 cut(s)	468, 573, 792, 969
MslI	CAYNNNNRTG	3 cut(s)	348, 411, 651
MspA1I	CMGCKG	4 cut(s)	38, 152, 675, 965
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	2 cut(s)	395, 978
MspR9I	CCNGG	1 cut(s)	193
MunI	CAATTG	2 cut(s)	174, 233
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	260, 847, 869, 971
NdeII	GATC	5 cut(s)	391, 424, 624, 765, 937
NlaIV	GGNNCC	3 cut(s)	426, 864, 880
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	1022
NsiI	ATGCAT	1 cut(s)	634
PagI	TCATGA	2 cut(s)	307, 924
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	4 cut(s)	60, 84, 691, 906
PkrI	GCNGC	5 cut(s)	540, 721, 852, 874, 976
Ppu21I	YACGTR	2 cut(s)	380, 1009
PshBI	ATTAAT	1 cut(s)	792
Psp6I	CCWGG	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	3 cut(s)	426, 864, 880
PspPI	GGNCC	3 cut(s)	818, 879, 1012
PstI	CTGCAG	1 cut(s)	877
PsuI	RGATCY	4 cut(s)	391, 424, 624, 937
PvuII	CAGCTG	3 cut(s)	38, 675, 965
RsaI	GTAC	2 cut(s)	239, 986
RsaNI	GTAC	2 cut(s)	238, 985
RseI	CAYNNNNRTG	3 cut(s)	348, 411, 651
SaqAI	TTAA	4 cut(s)	468, 573, 792, 969
SatI	GCNGC	5 cut(s)	539, 720, 851, 873, 975
Sau3AI	GATC	5 cut(s)	391, 424, 624, 765, 937
Sau96I	GGNCC	3 cut(s)	818, 879, 1012
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	3 cut(s)	307, 682, 757
SfcI	CTRYAG	1 cut(s)	873
SinI	GGWCC	3 cut(s)	818, 879, 1012
SmiMI	CAYNNNNRTG	3 cut(s)	348, 411, 651
SmlI	CTYRAG	3 cut(s)	74, 467, 867
SmoI	CTYRAG	3 cut(s)	74, 467, 867
Sse9I	AATT	6 cut(s)	174, 233, 458, 479, 660, 843
SsiI	CCGC	4 cut(s)	150, 214, 254, 850
SspI	AATATT	1 cut(s)	1032
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	332, 421
TaiI	ACGT	2 cut(s)	382, 1011
TaqI	TCGA	2 cut(s)	143, 411
TasI	AATT	6 cut(s)	174, 233, 458, 479, 660, 843
TatI	WGTACW	2 cut(s)	237, 984
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	4 cut(s)	60, 84, 691, 906
Tru1I	TTAA	4 cut(s)	468, 573, 792, 969
Tru9I	TTAA	4 cut(s)	468, 573, 792, 969
TscAI	CASTG	2 cut(s)	457, 687
TseFI	GTSAC	1 cut(s)	1022
TseI	GCWGC	4 cut(s)	538, 719, 872, 974
Tsp45I	GTSAC	1 cut(s)	1022
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	2 cut(s)	457, 687
Vha464I	CTTAAG	1 cut(s)	467
VneI	GTGCAC	1 cut(s)	678
VpaK11BI	GGWCC	3 cut(s)	818, 879, 1012
VspI	ATTAAT	1 cut(s)	792
XapI	RAATTY	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	611
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.