Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

5801697 .. 5812928

Gene Structure 11232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG067600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTGTTCATCGGGTATAGAACCACCAATTACCAATATCAAGCTTATAAGGAGACAGAGCCTCAATATGATTCATTGCAAGGGGCATGGGAATGGGCACGTAAGACCTTAATGGACCATGCTTCGGATAAGCGAGAACATATTTACACGAGGGAGCAATTGGAGAAGGCACAAACTGCTGATCCTGTCTGGAATGCCTCCCAATGTGAGATGGTTCATTATGGGAAGATGCATGATACTTGGATTTACAATGCTCAGGAGCTACTGCATCAGATTTTCATAGCAAACATTGGAAACTTAACTCAAAAGATTGATGATGCTGAAGCAGAACCTATGCTAGATGGGTCTTCTAGTATTGAATATAGATTCATTATGTGCCCGGAGTTCATGAACTTGGAGCCTGGATCAACGTATTCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000719 GO:0003674 GO:0003824 GO:0003904 GO:0003913 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051716 GO:0071704 GO:0071949 GO:0090304 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_photolyase

Protein Analysis

140

Amino Acids

16.47

Weight (kDa)

4.8

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
AclWI	GGATC	2 cut(s)	176, 412
AcuI	CTGAAG	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	2 cut(s)	44, 262
AluI	AGCT	2 cut(s)	44, 262
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	2 cut(s)	176, 412
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	2 cut(s)	100, 380
BauI	CACGAG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	339
BccI	CCATC	2 cut(s)	205, 335
BciT130I	CCWGG	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	2 cut(s)	338, 351
Bme1390I	CCNGG	2 cut(s)	380, 402
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	2 cut(s)	380, 402
BmsI	GCATC	3 cut(s)	219, 277, 307
BpiI	GAAGAC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	269
BseSI	GKGCMC	2 cut(s)	100, 380
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	100, 380
Bsp143I	GATC	2 cut(s)	181, 404
BspCNI	CTCAG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	399
BspPI	GGATC	2 cut(s)	176, 412
BsrDI	GCAATG	1 cut(s)	74
BssMI	GATC	2 cut(s)	181, 404
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	184, 407
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	2 cut(s)	181, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	378, 400
BstSLI	GKGCMC	2 cut(s)	100, 380
BstV2I	GAAGAC	1 cut(s)	339
CciI	TCATGA	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	115
CviAII	CATG	4 cut(s)	87, 119, 233, 388
CviJI	RGCY	4 cut(s)	44, 61, 262, 400
CviKI_1	RGCY	4 cut(s)	44, 61, 262, 400
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	183, 406
DpnII	GATC	2 cut(s)	181, 404
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	400
EcoT22I	ATGCAT	1 cut(s)	234
FaeI	CATG	4 cut(s)	90, 122, 236, 391
FatI	CATG	4 cut(s)	86, 118, 232, 387
FspBI	CTAG	2 cut(s)	338, 351
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	4 cut(s)	90, 122, 236, 391
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	2 cut(s)	71, 366
HpaII	CCGG	1 cut(s)	380
Hpy188I	TCNGA	2 cut(s)	127, 273
Hpy188III	TCNNGA	3 cut(s)	190, 257, 388
HpyAV	CCTTC	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	100, 410
HpyCH4V	TGCA	3 cut(s)	79, 232, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	100, 410
Hsp92II	CATG	4 cut(s)	90, 122, 236, 391
Kzo9I	GATC	2 cut(s)	181, 404
LmnI	GCTCC	3 cut(s)	154, 259, 397
LpnPI	CCDG	6 cut(s)	175, 198, 242, 387, 393, 414
LweI	GCATC	3 cut(s)	219, 277, 307
MaeI	CTAG	2 cut(s)	338, 351
MaeII	ACGT	2 cut(s)	100, 410
MalI	GATC	2 cut(s)	183, 406
MboI	GATC	2 cut(s)	181, 404
MboII	GAAGA	2 cut(s)	238, 339
MfeI	CAATTG	1 cut(s)	158
MhlI	GDGCHC	2 cut(s)	100, 380
MluCI	AATT	2 cut(s)	28, 158
MnlI	CCTC	3 cut(s)	72, 144, 208
Mph1103I	ATGCAT	1 cut(s)	234
MseI	TTAA	3 cut(s)	110, 299, 421
MslI	CAYNNNNRTG	1 cut(s)	91
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	380, 402
MunI	CAATTG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	176
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	2 cut(s)	181, 404
NlaIII	CATG	4 cut(s)	90, 122, 236, 391
NlaIV	GGNNCC	1 cut(s)	399
NsiI	ATGCAT	1 cut(s)	234
PagI	TCATGA	1 cut(s)	387
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	71, 366
Ppu21I	YACGTR	1 cut(s)	101
PsiI	TTATAA	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	110, 299, 421
Sau3AI	GATC	2 cut(s)	181, 404
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	380, 402
SduI	GDGCHC	2 cut(s)	100, 380
SetI	ASST	6 cut(s)	46, 103, 110, 264, 334, 413
SfaNI	GCATC	3 cut(s)	219, 277, 307
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	91
Sse9I	AATT	2 cut(s)	28, 158
SspMI	CTAG	2 cut(s)	338, 351
StyD4I	CCNGG	2 cut(s)	378, 400
TaiI	ACGT	2 cut(s)	103, 413
TasI	AATT	2 cut(s)	28, 158
TfiI	GAWTC	2 cut(s)	71, 366
Tru1I	TTAA	3 cut(s)	110, 299, 421
Tru9I	TTAA	3 cut(s)	110, 299, 421
TspDTI	ATGAA	6 cut(s)	63, 206, 268, 358, 376, 404
VpaK11BI	GGWCC	1 cut(s)	115
XspI	CTAG	2 cut(s)	338, 351
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.