Rroxscaffold_1G00060480

Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
82702662 .. 82709102
6441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060480.1

Sequence Viewer

Length: 1185 bp
ATGCCTCCCAAGTCTGCAAAAGGCAAGGAAGCCCCAGCTGAGCGGCCCATCCTCGGCCGATTCTCATCTCACCTCAAGATTGGGATCGTTGGATTGCCAAATGTTGGAAAATCTACTCTTTTCAACACGCTCACGAAGTTGTCGATACCGGCCGAGAACTTCCCTTTCTGCACAATTGAACCCAATGAAGCCAGGGTCAACATTCCTGATGAGCGGTTTGACTGGCTTTGCCAATTGTACAAGCCGAAAAGCGCGGTATCAGCCTTTTTGGAAATCCATGATATAGCTGGACTTGTTCGTGGTGCGCATGAAGGACAAGGGTTGGGCAACAGTTTCTTATCCCATATCCGTGCTGTTGATGGCATTTTTCATGTTTTACGTGCATTTGAAGATCCAGATATCATCCATGTCGATGACACTGTGGACCCTGTGAGGGATTTAGAGATTATTAGTGCAGAATTGCGTCTTAAGGACATTGAATTCATGGAAAGGAGGATAGAGGATGTTGAAAAGAGCATGAAGAGGAGCAATGACAAGCAGCTAAAAGTAGAGCATGAACTTTGTGGAAGGCTCAAGGCATGGCTTGAGGATGGAAAAGATATCCGTCTAGGGGACTGGAAAGCTGCTGATGTCGAGATCCTGAATACCTTTCAATTGCTAACGGCTAAGCCTGTTGTTTACTTGGTTAACATGAATGAGAGAGATTACCAAAGGAAGAAGAATAAGTTCTTGCCAAAGATCCATGCATGGGTGCAGGAACATGGAGGTGAGAAAATTATTCCATTCAGCTGTGCACTGGAAAGGAATCTTGCTGATTTGCCACCAGATGAAGCAGCAAAGTATTGTGAGGAGAACAAAGTGGAAAGTGCCCTTCCCAAGATCATAAAGACTGGATTTTCAGCCATTAATCTCATATACTTTTTCACAGCTGGTCCTGATGAGGTGAAATGCTGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGGTCATGAAGTTTGAAGATCTAAAGGAACTTGGTAGCGAACCAGCTGTTAAGGCTGCCGGTAAGTACAGACAAGAAGGGAAGACATACGTGGTCCAAGATGGAGACATAATATTCTTCAAGTTTAATGTTTCTGGAGGTGGGAAGAAGTGA

Protein Analysis

394

Amino Acids

44.42

Weight (kDa)

6.58

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 26 - 136 4.1e-20 50S ribosome-binding GTPase
FeoB_N PF02421 26 - 72 3e-07 Ferrous iron transport protein B
YchF-GTPase_C PF06071 304 - 387 5.1e-38 Protein of unknown function (DUF933)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 306
AccB7I CCANNNNNTGG 1 cut(s) 104
AccBSI CCGCTC 2 cut(s) 43, 214
AccII CGCG 1 cut(s) 254
AciI CCGC 4 cut(s) 43, 214, 254, 964
AclWI GGATC 4 cut(s) 92, 386, 631, 733
AcoI YGGCCR 2 cut(s) 55, 150
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 2 cut(s) 239, 1100
AfiI CCNNNNNNNGG 5 cut(s) 53, 104, 433, 610, 748
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 9 cut(s) 124, 179, 389, 479, 509, 653, 972, 1049, 1153
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 8 cut(s) 38, 287, 541, 623, 789, 929, 986, 1079
AluI AGCT 8 cut(s) 38, 287, 541, 623, 789, 929, 986, 1079
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 1 cut(s) 1131
Alw44I GTGCAC 1 cut(s) 792
AlwI GGATC 4 cut(s) 92, 386, 631, 733
AoxI GGCC 3 cut(s) 44, 55, 150
ApaLI GTGCAC 1 cut(s) 792
ApeKI GCWGC 5 cut(s) 538, 623, 833, 986, 1088
ApoI RAATTY 1 cut(s) 479
AseI ATTAAT 1 cut(s) 906
Asp700I GAANNNNTTC 1 cut(s) 725
AspLEI GCGC 2 cut(s) 254, 307
AspS9I GGNCC 5 cut(s) 45, 424, 932, 993, 1126
AsuHPI GGTGA 3 cut(s) 62, 779, 955
AvaII GGWCC 4 cut(s) 424, 932, 993, 1126
BaeGI GKGCMC 2 cut(s) 796, 871
BbsI GAAGAC 1 cut(s) 1121
Bbv12I GWGCWC 1 cut(s) 796
BbvCI CCTCAGC 1 cut(s) 1032
BbvI GCAGC 5 cut(s) 550, 610, 845, 973, 1075
BccI CCATC 5 cut(s) 56, 353, 584, 1004, 1127
BceAI ACGGC 1 cut(s) 678
BciT130I CCWGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 1131
BfaI CTAG 1 cut(s) 608
BfmI CTRYAG 1 cut(s) 987
BfrI CTTAAG 1 cut(s) 467
BglII AGATCT 1 cut(s) 1051
BisI GCNGC 7 cut(s) 44, 539, 624, 834, 965, 987, 1089
BlpI GCTNAGC 2 cut(s) 39, 666
BlsI GCNGC 7 cut(s) 45, 540, 625, 835, 966, 988, 1090
Bme1390I CCNGG 1 cut(s) 193
Bme18I GGWCC 4 cut(s) 424, 932, 993, 1126
BmgT120I GGNCC 5 cut(s) 45, 424, 932, 993, 1126
BmiI GGNNCC 3 cut(s) 426, 978, 994
BmrFI CCNGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 1121
Bpu10I CCTNAGC 1 cut(s) 1032
Bpu1102I GCTNAGC 2 cut(s) 39, 666
BpuEI CTTGAG 4 cut(s) 59, 557, 605, 966
BsaAI YACGTR 2 cut(s) 380, 1123
BsaBI GATNNNNATC 2 cut(s) 64, 83
BsaJI CCNNGG 2 cut(s) 52, 192
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 104, 433, 610, 748
Bse118I RCCGGY 2 cut(s) 148, 1091
Bse1I ACTGG 4 cut(s) 227, 620, 801, 895
Bse3DI GCAATG 1 cut(s) 535
Bse8I GATNNNNATC 2 cut(s) 64, 83
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 52, 192
BseGI GGATG 5 cut(s) 48, 402, 508, 595, 996
BseJI GATNNNNATC 2 cut(s) 64, 83
BseLI CCNNNNNNNGG 5 cut(s) 53, 104, 433, 610, 748
BseMI GCAATG 1 cut(s) 535
BseMII CTCAG 2 cut(s) 30, 1023
BseNI ACTGG 4 cut(s) 227, 620, 801, 895
BseRI GAGGAG 3 cut(s) 538, 863, 969
BseSI GKGCMC 2 cut(s) 796, 871
BseX3I CGGCCG 2 cut(s) 55, 150
BseXI GCAGC 5 cut(s) 550, 610, 845, 973, 1075
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 3 cut(s) 154, 474, 773
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 2 cut(s) 58, 153
BshFI GGCC 3 cut(s) 46, 57, 152
BsiEI CGRYCG 2 cut(s) 58, 153
BsiHKAI GWGCWC 1 cut(s) 796
BsiSI CCGG 2 cut(s) 149, 1092
BslFI GGGAC 2 cut(s) 626, 1006
BslI CCNNNNNNNGG 5 cut(s) 53, 104, 433, 610, 748
BsmAI GTCTC 1 cut(s) 1131
BsmFI GGGAC 2 cut(s) 626, 1006
BsnI GGCC 3 cut(s) 46, 57, 152
Bsp1286I GDGCHC 2 cut(s) 796, 871
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 6 cut(s) 84, 391, 636, 738, 879, 1051
Bsp1720I GCTNAGC 2 cut(s) 39, 666
BspACI CCGC 4 cut(s) 43, 214, 254, 964
BspANI GGCC 3 cut(s) 46, 57, 152
BspCNI CTCAG 2 cut(s) 31, 1024
BspFNI CGCG 1 cut(s) 254
BspHI TCATGA 1 cut(s) 1038
BspLI GGNNCC 3 cut(s) 426, 978, 994
BspMAI CTGCAG 1 cut(s) 991
BspPI GGATC 4 cut(s) 92, 386, 631, 733
BspTI CTTAAG 1 cut(s) 467
BsrBI CCGCTC 2 cut(s) 43, 214
BsrDI GCAATG 1 cut(s) 535
BsrFI RCCGGY 2 cut(s) 148, 1091
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 4 cut(s) 227, 620, 801, 895
BssAI RCCGGY 2 cut(s) 148, 1091
BssECI CCNNGG 2 cut(s) 52, 192
BssMI GATC 6 cut(s) 84, 391, 636, 738, 879, 1051
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 332, 421
Bst6I CTCTTC 1 cut(s) 515
BstAFI CTTAAG 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 237
BstBAI YACGTR 2 cut(s) 380, 1123
BstC8I GCNNGC 1 cut(s) 953
BstDEI CTNAG 3 cut(s) 39, 666, 1032
BstF5I GGATG 5 cut(s) 48, 402, 508, 595, 996
BstFNI CGCG 1 cut(s) 254
BstHHI GCGC 2 cut(s) 254, 307
BstKTI GATC 6 cut(s) 87, 394, 639, 741, 882, 1054
BstMAI GTCTC 1 cut(s) 1131
BstMBI GATC 6 cut(s) 84, 391, 636, 738, 879, 1051
BstMCI CGRYCG 2 cut(s) 58, 153
BstMWI GCNNNNNNNGC 4 cut(s) 260, 961, 983, 1085
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 987
BstSLI GKGCMC 2 cut(s) 796, 871
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 5 cut(s) 550, 610, 845, 973, 1075
BstV2I GAAGAC 1 cut(s) 1121
BstX2I RGATCY 4 cut(s) 391, 636, 738, 1051
BstYI RGATCY 4 cut(s) 391, 636, 738, 1051
BstZI CGGCCG 2 cut(s) 55, 150
BsuRI GGCC 3 cut(s) 46, 57, 152
BtsCI GGATG 5 cut(s) 48, 402, 508, 595, 996
BtsIMutI CAGTG 2 cut(s) 417, 794
Cac8I GCNNGC 1 cut(s) 953
CciI TCATGA 1 cut(s) 1038
CfoI GCGC 2 cut(s) 254, 307
Cfr10I RCCGGY 2 cut(s) 148, 1091
Cfr13I GGNCC 5 cut(s) 45, 424, 932, 993, 1126
CseI GACGC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 238, 1099
CviQI GTAC 2 cut(s) 238, 1099
DdeI CTNAG 3 cut(s) 39, 666, 1032
DpnI GATC 6 cut(s) 86, 393, 638, 740, 881, 1053
DpnII GATC 6 cut(s) 84, 391, 636, 738, 879, 1051
EaeI YGGCCR 2 cut(s) 55, 150
EagI CGGCCG 2 cut(s) 55, 150
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
EclXI CGGCCG 2 cut(s) 55, 150
Eco32I GATATC 2 cut(s) 400, 601
Eco47I GGWCC 4 cut(s) 424, 932, 993, 1126
Eco52I CGGCCG 2 cut(s) 55, 150
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 191
EcoRV GATATC 2 cut(s) 400, 601
EcoT22I ATGCAT 1 cut(s) 748
FaqI GGGAC 2 cut(s) 626, 1006
Fnu4HI GCNGC 7 cut(s) 44, 539, 624, 834, 965, 987, 1089
FokI GGATG 5 cut(s) 35, 389, 515, 602, 983
Fsp4HI GCNGC 7 cut(s) 44, 539, 624, 834, 965, 987, 1089
FspAI RTGCGCAY 1 cut(s) 306
FspBI CTAG 1 cut(s) 608
FspI TGCGCA 1 cut(s) 306
GlaI GCGC 2 cut(s) 253, 306
GluI GCNGC 7 cut(s) 44, 539, 624, 834, 965, 987, 1089
GsaI CCCAGC 1 cut(s) 38
HaeIII GGCC 3 cut(s) 46, 57, 152
HapII CCGG 2 cut(s) 149, 1092
HgaI GACGC 1 cut(s) 452
HhaI GCGC 2 cut(s) 254, 307
Hin6I GCGC 2 cut(s) 252, 305
HinP1I GCGC 2 cut(s) 252, 305
HincII GTYRAC 2 cut(s) 199, 688
HindII GTYRAC 2 cut(s) 199, 688
HinfI GANTC 3 cut(s) 60, 805, 1020
HpaI GTTAAC 1 cut(s) 688
HpaII CCGG 2 cut(s) 149, 1092
HphI GGTGA 3 cut(s) 62, 779, 955
Hpy166II GTNNAC 5 cut(s) 199, 424, 679, 688, 794
Hpy188III TCNNGA 9 cut(s) 76, 133, 206, 395, 634, 640, 935, 1039, 1167
Hpy8I GTNNAC 5 cut(s) 199, 424, 679, 688, 794
HpyAV CCTTC 4 cut(s) 305, 561, 881, 1103
HpyCH4III ACNGT 2 cut(s) 332, 421
HpyCH4IV ACGT 2 cut(s) 379, 1122
HpyCH4V TGCA 8 cut(s) 17, 171, 383, 455, 746, 754, 794, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 961, 983, 1085
HpyF3I CTNAG 3 cut(s) 39, 666, 1032
HpySE526I ACGT 2 cut(s) 379, 1122
HspAI GCGC 2 cut(s) 252, 305
KspAI GTTAAC 1 cut(s) 688
Kzo9I GATC 6 cut(s) 84, 391, 636, 738, 879, 1051
LmnI GCTCC 2 cut(s) 525, 982
Lsp1109I GCAGC 5 cut(s) 550, 610, 845, 973, 1075
MaeI CTAG 1 cut(s) 608
MaeII ACGT 2 cut(s) 379, 1122
MalI GATC 6 cut(s) 86, 393, 638, 740, 881, 1053
MbiI CCGCTC 2 cut(s) 43, 214
MboI GATC 6 cut(s) 84, 391, 636, 738, 879, 1051
MboII GAAGA 7 cut(s) 401, 532, 727, 730, 1061, 1126, 1141
MfeI CAATTG 3 cut(s) 174, 233, 653
MflI RGATCY 4 cut(s) 391, 636, 738, 1051
MhlI GDGCHC 2 cut(s) 796, 871
MluCI AATT 7 cut(s) 174, 233, 458, 479, 653, 774, 957
MmeI TCCRAC 2 cut(s) 70, 85
Mph1103I ATGCAT 1 cut(s) 748
MroXI GAANNNNTTC 1 cut(s) 725
MseI TTAA 5 cut(s) 468, 687, 906, 1083, 1158
MslI CAYNNNNRTG 3 cut(s) 348, 411, 765
MspA1I CMGCKG 4 cut(s) 38, 789, 929, 1079
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 2 cut(s) 149, 1092
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 3 cut(s) 174, 233, 653
MvaI CCWGG 1 cut(s) 193
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 4 cut(s) 260, 961, 983, 1085
NdeII GATC 6 cut(s) 84, 391, 636, 738, 879, 1051
NlaIV GGNNCC 3 cut(s) 426, 978, 994
NmeAIII GCCGAG 2 cut(s) 33, 178
NsbI TGCGCA 1 cut(s) 306
NsiI ATGCAT 1 cut(s) 748
PagI TCATGA 1 cut(s) 1038
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 725
PfeI GAWTC 3 cut(s) 60, 805, 1020
PflMI CCANNNNNTGG 1 cut(s) 104
PkrI GCNGC 7 cut(s) 45, 540, 625, 835, 966, 988, 1090
Ppu21I YACGTR 2 cut(s) 380, 1123
PshBI ATTAAT 1 cut(s) 906
Psp6I CCWGG 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 426, 978, 994
PspPI GGNCC 5 cut(s) 45, 424, 932, 993, 1126
PstI CTGCAG 1 cut(s) 991
PsuI RGATCY 4 cut(s) 391, 636, 738, 1051
PvuII CAGCTG 4 cut(s) 38, 789, 929, 1079
RsaI GTAC 2 cut(s) 239, 1100
RsaNI GTAC 2 cut(s) 238, 1099
RseI CAYNNNNRTG 3 cut(s) 348, 411, 765
SaqAI TTAA 5 cut(s) 468, 687, 906, 1083, 1158
SatI GCNGC 7 cut(s) 44, 539, 624, 834, 965, 987, 1089
Sau3AI GATC 6 cut(s) 84, 391, 636, 738, 879, 1051
Sau96I GGNCC 5 cut(s) 45, 424, 932, 993, 1126
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 2 cut(s) 796, 871
SfcI CTRYAG 1 cut(s) 987
SinI GGWCC 4 cut(s) 424, 932, 993, 1126
SmiMI CAYNNNNRTG 3 cut(s) 348, 411, 765
SmlI CTYRAG 5 cut(s) 74, 467, 572, 584, 981
SmoI CTYRAG 5 cut(s) 74, 467, 572, 584, 981
Sse9I AATT 7 cut(s) 174, 233, 458, 479, 653, 774, 957
SsiI CCGC 4 cut(s) 43, 214, 254, 964
SspI AATATT 1 cut(s) 1146
SspMI CTAG 1 cut(s) 608
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 332, 421
TaiI ACGT 2 cut(s) 382, 1125
TaqI TCGA 3 cut(s) 143, 411, 633
TasI AATT 7 cut(s) 174, 233, 458, 479, 653, 774, 957
TatI WGTACW 2 cut(s) 237, 1098
TauI GCSGC 2 cut(s) 46, 967
TfiI GAWTC 3 cut(s) 60, 805, 1020
Tru1I TTAA 5 cut(s) 468, 687, 906, 1083, 1158
Tru9I TTAA 5 cut(s) 468, 687, 906, 1083, 1158
TscAI CASTG 2 cut(s) 424, 801
TseI GCWGC 5 cut(s) 538, 623, 833, 986, 1088
TspGWI ACGGA 2 cut(s) 338, 593
TspRI CASTG 2 cut(s) 424, 801
Van91I CCANNNNNTGG 1 cut(s) 104
Vha464I CTTAAG 1 cut(s) 467
VneI GTGCAC 1 cut(s) 792
VpaK11BI GGWCC 4 cut(s) 424, 932, 993, 1126
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 725
XspI CTAG 1 cut(s) 608
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.