Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Reverse (-)

48080637 .. 48094875

Gene Structure 14239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG196500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCCGGTGAAATGCTGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGCTTACAAGGAGAGAGCCAAGAGGACAAGTATTGATGTGTGGACTTGCTTTGATTATCAGCCTCAGCAAAAGAGCGTTGAATGTTGGTTGTCCAGAGAGTACAACTTCGAAAAGAAAGGAGCAAAACAAAATAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

78

Amino Acids

8.77

Weight (kDa)

10.16

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YchF-GTPase_C	PF06071	3 - 35	4.1e-12	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	36, 178
AluBI	AGCT	2 cut(s)	50, 100
AluI	AGCT	2 cut(s)	50, 100
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	19
AsuII	TTCGAA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	57
BbvCI	CCTCAGC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	29, 51
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	2 cut(s)	30, 52
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	42, 58
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	4
BseGI	GGATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	87, 175
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	206
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	1 cut(s)	28
BspCNI	CTCAG	2 cut(s)	88, 174
BspLI	GGNNCC	2 cut(s)	42, 58
BspMAI	CTGCAG	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BstBI	TTCGAA	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	96, 161
BstF5I	GGATG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 47
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	198
CviJI	RGCY	6 cut(s)	31, 41, 50, 100, 115, 159
CviKI_1	RGCY	6 cut(s)	31, 41, 50, 100, 115, 159
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	2 cut(s)	96, 161
Eco47I	GGWCC	1 cut(s)	57
FaiI	YATR	1 cut(s)	66
FaqI	GGGAC	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	29, 51
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	29, 51
GluI	GCNGC	2 cut(s)	29, 51
HapII	CCGG	1 cut(s)	5
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 47
HpyF3I	CTNAG	2 cut(s)	96, 161
LmnI	GCTCC	2 cut(s)	46, 217
LpnPI	CCDG	3 cut(s)	18, 39, 204
Lsp1109I	GCAGC	1 cut(s)	37
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	4 cut(s)	54, 74, 113, 170
MspI	CCGG	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	25, 47
NlaIV	GGNNCC	2 cut(s)	42, 58
NspV	TTCGAA	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	30, 52
PspN4I	GGNNCC	2 cut(s)	42, 58
PspPI	GGNCC	1 cut(s)	57
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SatI	GCNGC	2 cut(s)	29, 51
Sau96I	GGNCC	1 cut(s)	57
SetI	ASST	2 cut(s)	52, 102
SfcI	CTRYAG	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	206
SgeI	CNNG	9 cut(s)	17, 28, 59, 66, 117, 129, 137, 155, 203
SinI	GGWCC	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	28
TaqI	TCGA	1 cut(s)	206
TasI	AATT	1 cut(s)	21
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	84
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.