Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

6640291 .. 6641794

Gene Structure 1504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG085400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAGCTGAGGAAGATTCAGCGGACACAGTGGCATTCAGTTCTCCAAGGGACAGTGCCGCTCAAGGCATGGCTTGAGGATGGAAAAGATATCCGTCTAGGGGACTGGAAAGCTGCTGATGTCGAGATCCTGAATACCTTTCAATTGCTAACAGCTAAGCCTGTTGTTTACTTGGTGAAATGCTGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGGACTCTTATGAGTATCTATTTAAAGAGCTGAGCAAGTACAAATGGATCATTCTCAGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050896 GO:0055044 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

109

Amino Acids

12.84

Weight (kDa)

9.48

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YchF-GTPase_C	PF06071	59 - 89	1.3e-11	Protein of unknown function (DUF933)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	61
AciI	CCGC	3 cut(s)	22, 59, 196
AclWI	GGATC	2 cut(s)	121, 320
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	143, 204
AluBI	AGCT	5 cut(s)	7, 113, 155, 218, 295
AluI	AGCT	5 cut(s)	7, 113, 155, 218, 295
AlwI	GGATC	2 cut(s)	121, 320
ApeKI	GCWGC	2 cut(s)	113, 218
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	225
BbvCI	CCTCAGC	2 cut(s)	8, 264
BbvI	GCAGC	2 cut(s)	100, 205
BccI	CCATC	2 cut(s)	74, 236
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	4 cut(s)	59, 114, 197, 219
BlpI	GCTNAGC	2 cut(s)	156, 296
BlsI	GCNGC	4 cut(s)	60, 115, 198, 220
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	210, 226
Bpu10I	CCTNAGC	2 cut(s)	8, 264
Bpu1102I	GCTNAGC	2 cut(s)	156, 296
BpuEI	CTTGAG	3 cut(s)	47, 95, 198
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	2 cut(s)	85, 228
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	255, 287
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	100, 205
BslFI	GGGAC	3 cut(s)	64, 116, 238
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmFI	GGGAC	3 cut(s)	64, 116, 238
BsmI	GAATGC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	126, 312
Bsp1720I	GCTNAGC	2 cut(s)	156, 296
BspACI	CCGC	3 cut(s)	22, 59, 196
BspCNI	CTCAG	2 cut(s)	256, 288
BspLI	GGNNCC	2 cut(s)	210, 226
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	2 cut(s)	121, 320
BsrBI	CCGCTC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	2 cut(s)	126, 312
BssT1I	CCWWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	30, 55
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	5 cut(s)	8, 156, 264, 296, 320
BstF5I	GGATG	2 cut(s)	85, 228
BstKTI	GATC	2 cut(s)	129, 315
BstMBI	GATC	2 cut(s)	126, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 215
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	100, 205
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	85, 228
BtsIMutI	CAGTG	2 cut(s)	35, 60
Cac8I	GCNNGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	69
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	5 cut(s)	8, 156, 264, 296, 320
DpnI	GATC	2 cut(s)	128, 314
DpnII	GATC	2 cut(s)	126, 312
DraI	TTTAAA	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	1 cut(s)	72
FaiI	YATR	4 cut(s)	70, 234, 276, 328
FaqI	GGGAC	3 cut(s)	64, 116, 238
FatI	CATG	1 cut(s)	68
Fnu4HI	GCNGC	4 cut(s)	59, 114, 197, 219
FokI	GGATG	2 cut(s)	92, 215
Fsp4HI	GCNGC	4 cut(s)	59, 114, 197, 219
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	4 cut(s)	59, 114, 197, 219
Hin1II	CATG	1 cut(s)	72
HinfI	GANTC	3 cut(s)	16, 252, 269
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	124, 130
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	30, 55
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 215
HpyF3I	CTNAG	5 cut(s)	8, 156, 264, 296, 320
Hsp92II	CATG	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	126, 312
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	91, 143, 169, 174, 207, 307
Lsp1109I	GCAGC	2 cut(s)	100, 205
MaeI	CTAG	1 cut(s)	98
MalI	GATC	2 cut(s)	128, 314
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	2 cut(s)	126, 312
MboII	GAAGA	1 cut(s)	25
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	126
MluCI	AATT	2 cut(s)	143, 189
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	5 cut(s)	3, 70, 222, 242, 259
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	22
MunI	CAATTG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	193, 215
NdeII	GATC	2 cut(s)	126, 312
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	2 cut(s)	210, 226
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	16, 252
PkrI	GCNGC	4 cut(s)	60, 115, 198, 220
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	210, 226
PspPI	GGNCC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	4 cut(s)	59, 114, 197, 219
Sau3AI	GATC	2 cut(s)	126, 312
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	1 cut(s)	263
SetI	ASST	6 cut(s)	9, 115, 140, 157, 220, 297
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	225
SmlI	CTYRAG	3 cut(s)	62, 74, 213
SmoI	CTYRAG	3 cut(s)	62, 74, 213
Sse9I	AATT	2 cut(s)	143, 189
SsiI	CCGC	3 cut(s)	22, 59, 196
SspMI	CTAG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	30, 55
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	143, 189
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	2 cut(s)	61, 199
TfiI	GAWTC	2 cut(s)	16, 252
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	35, 60
TseI	GCWGC	2 cut(s)	113, 218
TspDTI	ATGAA	2 cut(s)	17, 244
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	2 cut(s)	35, 60
VpaK11BI	GGWCC	1 cut(s)	225
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.