Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Forward (+)

11114995 .. 11121421

Gene Structure 6427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTTACAGAACCAGCTAAGCAAAGATCTTTTGTGGAAGAGAGTTTGGTGAAACAAAGCCTTAAGGGCACCGCCCATAACCCTAGCAGAGCTCTACTAGGTCAAAAACTAACAAGTTCAAATTTTTCTGTTTCCACTTTCGGAAACCTACCTCCCCGAAATTTTCTCTCTGCTTCCCTCTTCTCCCGCGTCGCTCACCATTTTTCTTTTTCCGATTTCTTCGCCGTCCCGCGTCCAATGGACTTGATTCCAGTTGTCCTTGGGGACCGTCTCTTCCTCCTCTACACGGTGGTACCGCGTGTGGGACACGCTGTTGATTTATGTGACTTTTTACGAGAATTTCTTGGTACAGTTGGGAATCGTACTTGTGTTTTTGTTTTATTCGAGGGACTTATGGAGAAGCCATATAGATTTACTGGATTTGAATGGTTTTTACCCGCCATACAGGTCGCCATATTTATTGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.51

Weight (kDa)

9.14

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	292
AccB1I	GGYRCC	2 cut(s)	68, 292
AccII	CGCG	3 cut(s)	189, 232, 298
AciI	CCGC	5 cut(s)	72, 187, 230, 296, 438
AcsI	RAATTY	3 cut(s)	121, 160, 338
AfaI	GTAC	3 cut(s)	294, 349, 364
AfiI	CCNNNNNNNGG	2 cut(s)	286, 302
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	120, 425
AluBI	AGCT	3 cut(s)	17, 92, 468
AluI	AGCT	3 cut(s)	17, 92, 468
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	275
ApoI	RAATTY	3 cut(s)	121, 160, 338
Asp718I	GGTACC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	61, 188
AsuNHI	GCTAGC	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	71
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BanI	GGYRCC	2 cut(s)	68, 292
BanII	GRGCYC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	4 cut(s)	84, 98, 465, 469
BfrI	CTTAAG	1 cut(s)	62
BglI	GCCNNNNNGGC	1 cut(s)	66
BglII	AGATCT	1 cut(s)	26
BlpI	GCTNAGC	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	3 cut(s)	70, 266, 294
BmtI	GCTAGC	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 302
Bse1I	ACTGG	2 cut(s)	251, 421
BseDI	CCNNGG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	286, 302
BseNI	ACTGG	2 cut(s)	251, 421
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	71
Bsh1236I	CGCG	3 cut(s)	189, 232, 298
BshNI	GGYRCC	2 cut(s)	68, 292
BsiHKAI	GWGCWC	1 cut(s)	94
BslFI	GGGAC	4 cut(s)	212, 278, 318, 402
BslI	CCNNNNNNNGG	2 cut(s)	286, 302
BsmAI	GTCTC	1 cut(s)	275
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	4 cut(s)	212, 278, 318, 402
Bsp1286I	GDGCHC	2 cut(s)	71, 94
Bsp143I	GATC	1 cut(s)	26
Bsp1720I	GCTNAGC	1 cut(s)	18
BspACI	CCGC	5 cut(s)	72, 187, 230, 296, 438
BspFNI	CGCG	3 cut(s)	189, 232, 298
BspLI	GGNNCC	3 cut(s)	70, 266, 294
BspOI	GCTAGC	1 cut(s)	468
BspT107I	GGYRCC	2 cut(s)	68, 292
BspTI	CTTAAG	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	251, 421
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	269, 289, 352
Bst6I	CTCTTC	3 cut(s)	33, 185, 278
BstAFI	CTTAAG	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	1 cut(s)	18
BstFNI	CGCG	3 cut(s)	189, 232, 298
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	3 cut(s)	189, 232, 298
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	2 cut(s)	178, 221
Csp6I	GTAC	3 cut(s)	293, 348, 363
CviJI	RGCY	5 cut(s)	17, 60, 92, 403, 468
CviKI_1	RGCY	5 cut(s)	17, 60, 92, 403, 468
CviQI	GTAC	3 cut(s)	293, 348, 363
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eam1104I	CTCTTC	3 cut(s)	33, 185, 278
EarI	CTCTTC	3 cut(s)	33, 185, 278
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	275
FaiI	YATR	7 cut(s)	78, 322, 395, 406, 408, 443, 455
FaqI	GGGAC	4 cut(s)	212, 278, 318, 402
FauI	CCCGC	3 cut(s)	194, 237, 445
FriOI	GRGCYC	1 cut(s)	94
FspBI	CTAG	4 cut(s)	84, 98, 465, 469
HgaI	GACGC	2 cut(s)	178, 221
HinfI	GANTC	2 cut(s)	247, 358
HphI	GGTGA	2 cut(s)	61, 188
Hpy188I	TCNGA	2 cut(s)	143, 214
Hpy99I	CGWCG	1 cut(s)	194
HpyCH4III	ACNGT	3 cut(s)	269, 289, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	18
KpnI	GGTACC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	26
LpnPI	CCDG	4 cut(s)	27, 264, 402, 431
MaeI	CTAG	4 cut(s)	84, 98, 465, 469
MaeIII	GTNAC	2 cut(s)	4, 323
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	4 cut(s)	50, 172, 211, 265
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	71, 94
MluCI	AATT	3 cut(s)	121, 160, 338
MnlI	CCTC	5 cut(s)	162, 188, 287, 290, 379
MseI	TTAA	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	62
MvnI	CGCG	3 cut(s)	189, 232, 298
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	1 cut(s)	26
NheI	GCTAGC	1 cut(s)	464
NlaIV	GGNNCC	3 cut(s)	70, 266, 294
NmuCI	GTSAC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	247, 358
Psp124BI	GAGCTC	1 cut(s)	94
PspN4I	GGNNCC	3 cut(s)	70, 266, 294
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	3 cut(s)	294, 349, 364
RsaNI	GTAC	3 cut(s)	293, 348, 363
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	265
SduI	GDGCHC	2 cut(s)	71, 94
SetI	ASST	7 cut(s)	19, 94, 103, 150, 154, 450, 470
SinI	GGWCC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	121, 160, 338
SsiI	CCGC	5 cut(s)	72, 187, 230, 296, 438
SspMI	CTAG	4 cut(s)	84, 98, 465, 469
SstI	GAGCTC	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	3 cut(s)	269, 289, 352
TaqI	TCGA	1 cut(s)	384
TasI	AATT	3 cut(s)	121, 160, 338
TfiI	GAWTC	2 cut(s)	247, 358
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	3 cut(s)	121, 160, 338
XspI	CTAG	4 cut(s)	84, 98, 465, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.