Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002020

Physical Location & Seq

Genomic Coordinates Reverse (-)

26777319 .. 26780893

Gene Structure 3575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25420.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAGAGGAGCAATGAGAAGGCATTAAAAATTGAGCATGAGTTGTGCCAAAAGATCAAGGCATGGCTTGAGGATGGGAAAGATGTCCGTCTAGGGGAGTGGAAAGCTGCTGAAGTTCCATGGGAGATCCTGAATACCTTTCAATTGCTAACAGCCAAGCCTGTTGTTTACTTGGTTAACATGAATGAGAAAGATTACCAGAGGAAAAAGAACAAGTTCTTGCCGAAGATCCATGCATGGGTGCAGGAACATGGAGCTGAACCAATTATTCCATTCAGCTGTGCATTAGAAAGGAATCTTGCTGATTTGCCACCTGAAGAAGCAGCAAAGTATTGTGAGCAGAACAACGTGCAAAGTGCCCTTACCAAGATCATAAAAACTGGATTTTCAGCGATTAATCTGATATACTTTTTCACTGCTGGACCTGATGAGGTGAAGTGCTGGCAAATTAGGCGGCAGACGAAAGCTCCTCAAGCTGCAGGGGCCATCCATACTGATTTCGAGAGAGGCTTCATTTGTGCTGAGGTCATGAAATTTGATGATCTGAAGGAACTCGGAAGTGAGCCAGCTGTTAAGGCTGCTGGTAAGTACAGACAGGAGGGGAAGACATACGTGGTCCAAGATGCAGACGTCATATTCTTCAAGTTTAATGTTTCCGGGGGCGGGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 YchF-GTPase_C

Protein Analysis

225

Amino Acids

25.48

Weight (kDa)

8.67

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002020)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30580
fragaria_vesca	FvH4_3g10200
malus_domestica	MD05G1272300.v1.1 MD10G1252400.v1.1
prunus_persica	Prupe.4G091100_v2.0.a1
pyrus_communis	pycom05g25420 pycom10g20820
rosa_chinensis	RchiOBHm_Chr2g0163541 RchiOBHm_Chr3g0491881 RchiOBHm_Chr4g0397881 RchiOBHm_Chr5g0016421
rosa_laevigata	RLG00000032248
rosa_multiflora	Rmu_sc0007506.1_g000001 Rmu_sc0012840.1_g000001 Rmu_sc0030879.1_g000006 Rmu_sc0033694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060480 Rroxscaffold_2G00138980 Rroxscaffold_5G00346700 Rroxscaffold_7G00170750
rosa_rugosa	Rorug04G0049400 Rorug05G0032000 Rorug05G0032100
rosa_samantha	Rh1BG158400 Rh1CG190100 Rh2AG301600 Rh2BG381000 Rh2DG325700 Rh3BG085200 Rh3BG217800 Rh3CG085400 Rh3CG230100 Rh4AG109900 Rh4AG196500 Rh5AG070900 Rh5AG125700 Rh5BG124700 Rh5CG079800 Rh5CG137000 Rh5DG067600 Rh5DG124400 Rh6AG215300 Rh7DG041100 Rh7DG139900
rosa_wichuraiana	Rw5G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
AciI	CCGC	2 cut(s)	454, 663
AclWI	GGATC	2 cut(s)	121, 223
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	3 cut(s)	132, 336, 566
AcyI	GRCGYC	1 cut(s)	630
AfaI	GTAC	1 cut(s)	590
AfiI	CCNNNNNNNGG	3 cut(s)	94, 238, 663
AgsI	TTSAA	2 cut(s)	143, 643
AluBI	AGCT	6 cut(s)	107, 257, 279, 467, 476, 569
AluI	AGCT	6 cut(s)	107, 257, 279, 467, 476, 569
AlwI	GGATC	2 cut(s)	121, 223
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	4 cut(s)	107, 323, 476, 578
ApoI	RAATTY	1 cut(s)	533
AseI	ATTAAT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	215
AspS9I	GGNCC	3 cut(s)	422, 483, 616
AsuC2I	CCSGG	1 cut(s)	658
AsuHPI	GGTGA	1 cut(s)	445
AvaII	GGWCC	2 cut(s)	422, 616
BaeGI	GKGCMC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	611
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	4 cut(s)	94, 335, 463, 565
BccI	CCATC	2 cut(s)	68, 494
BcnI	CCSGG	1 cut(s)	658
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	477
BisI	GCNGC	5 cut(s)	108, 324, 455, 477, 579
BlsI	GCNGC	5 cut(s)	109, 325, 456, 478, 580
Bme1390I	CCNGG	1 cut(s)	658
Bme18I	GGWCC	2 cut(s)	422, 616
BmgT120I	GGNCC	3 cut(s)	422, 483, 616
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	1 cut(s)	658
BmsI	GCATC	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	2 cut(s)	89, 456
BpuMI	CCSGG	1 cut(s)	658
BsaAI	YACGTR	1 cut(s)	613
BsaHI	GRCGYC	1 cut(s)	630
BsaJI	CCNNGG	2 cut(s)	119, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 238, 663
Bse1I	ACTGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	119, 657
BseGI	GGATG	2 cut(s)	79, 486
BseLI	CCNNNNNNNGG	3 cut(s)	94, 238, 663
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	22, 459
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	4 cut(s)	94, 335, 463, 565
BsgI	GTGCAG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	485
BsiSI	CCGG	1 cut(s)	657
BslI	CCNNNNNNNGG	3 cut(s)	94, 238, 663
BsnI	GGCC	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	5 cut(s)	54, 126, 228, 369, 541
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	2 cut(s)	454, 663
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	1 cut(s)	514
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	484
BspMAI	CTGCAG	1 cut(s)	481
BspPI	GGATC	2 cut(s)	121, 223
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	119, 657
BssMI	GATC	5 cut(s)	54, 126, 228, 369, 541
BssNI	GRCGYC	1 cut(s)	630
BssT1I	CCWWGG	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	630
BstBAI	YACGTR	1 cut(s)	613
BstC8I	GCNNGC	2 cut(s)	443, 567
BstDEI	CTNAG	1 cut(s)	522
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	79, 486
BstKTI	GATC	5 cut(s)	57, 129, 231, 372, 544
BstMBI	GATC	5 cut(s)	54, 126, 228, 369, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	451, 473, 482, 575
BstSCI	CCNGG	1 cut(s)	656
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	4 cut(s)	94, 335, 463, 565
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	2 cut(s)	126, 228
BstYI	RGATCY	2 cut(s)	126, 228
BsuRI	GGCC	1 cut(s)	485
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	79, 486
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	2 cut(s)	443, 567
CciI	TCATGA	1 cut(s)	528
Cfr13I	GGNCC	3 cut(s)	422, 483, 616
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	8 cut(s)	38, 63, 120, 181, 233, 237, 251, 529
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	5 cut(s)	56, 128, 230, 371, 543
DpnII	GATC	5 cut(s)	54, 126, 228, 369, 541
Eco130I	CCWWGG	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	422, 616
Eco57I	CTGAAG	3 cut(s)	132, 336, 566
EcoT14I	CCWWGG	1 cut(s)	119
EcoT22I	ATGCAT	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	8 cut(s)	41, 66, 123, 184, 236, 240, 254, 532
FatI	CATG	8 cut(s)	37, 62, 119, 180, 232, 236, 250, 528
FauI	CCCGC	1 cut(s)	656
Fnu4HI	GCNGC	5 cut(s)	108, 324, 455, 477, 579
FokI	GGATG	2 cut(s)	86, 473
Fsp4HI	GCNGC	5 cut(s)	108, 324, 455, 477, 579
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	5 cut(s)	108, 324, 455, 477, 579
HaeIII	GGCC	1 cut(s)	485
HapII	CCGG	1 cut(s)	657
Hin1I	GRCGYC	1 cut(s)	630
Hin1II	CATG	8 cut(s)	41, 66, 123, 184, 236, 240, 254, 532
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	295
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	2 cut(s)	169, 178
Hpy188I	TCNGA	3 cut(s)	402, 546, 557
Hpy188III	TCNNGA	3 cut(s)	130, 502, 529
Hpy8I	GTNNAC	2 cut(s)	169, 178
HpyAV	CCTTC	2 cut(s)	13, 541
HpyCH4IV	ACGT	3 cut(s)	348, 612, 630
HpyCH4V	TGCA	6 cut(s)	236, 244, 284, 352, 479, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	451, 473, 482, 575
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	3 cut(s)	348, 612, 630
Hsp92I	GRCGYC	1 cut(s)	630
Hsp92II	CATG	8 cut(s)	41, 66, 123, 184, 236, 240, 254, 532
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	5 cut(s)	54, 126, 228, 369, 541
LmnI	GCTCC	3 cut(s)	9, 254, 472
Lsp1109I	GCAGC	4 cut(s)	94, 335, 463, 565
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	3 cut(s)	348, 612, 630
MalI	GATC	5 cut(s)	56, 128, 230, 371, 543
MboI	GATC	5 cut(s)	54, 126, 228, 369, 541
MboII	GAAGA	5 cut(s)	16, 238, 329, 616, 631
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	2 cut(s)	126, 228
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	5 cut(s)	30, 143, 264, 447, 533
MnlI	CCTC	7 cut(s)	64, 195, 424, 480, 500, 517, 592
Mph1103I	ATGCAT	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	5 cut(s)	26, 177, 396, 573, 648
MspA1I	CMGCKG	2 cut(s)	279, 569
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	1 cut(s)	658
MunI	CAATTG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	451, 473, 482, 575
NciI	CCSGG	1 cut(s)	658
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	5 cut(s)	54, 126, 228, 369, 541
NlaIII	CATG	8 cut(s)	41, 66, 123, 184, 236, 240, 254, 532
NlaIV	GGNNCC	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	238
PagI	TCATGA	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	5 cut(s)	109, 325, 456, 478, 580
Ppu21I	YACGTR	1 cut(s)	613
PshBI	ATTAAT	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	484
PspPI	GGNCC	3 cut(s)	422, 483, 616
PstI	CTGCAG	1 cut(s)	481
PsuI	RGATCY	2 cut(s)	126, 228
PvuII	CAGCTG	2 cut(s)	279, 569
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
SaqAI	TTAA	5 cut(s)	26, 177, 396, 573, 648
SatI	GCNGC	5 cut(s)	108, 324, 455, 477, 579
Sau3AI	GATC	5 cut(s)	54, 126, 228, 369, 541
Sau96I	GGNCC	3 cut(s)	422, 483, 616
ScrFI	CCNGG	1 cut(s)	658
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	2 cut(s)	422, 616
SmlI	CTYRAG	2 cut(s)	68, 471
SmoI	CTYRAG	2 cut(s)	68, 471
Sse9I	AATT	5 cut(s)	30, 143, 264, 447, 533
SsiI	CCGC	2 cut(s)	454, 663
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	1 cut(s)	656
StyI	CCWWGG	1 cut(s)	119
TaiI	ACGT	3 cut(s)	351, 615, 633
TaqI	TCGA	1 cut(s)	501
TasI	AATT	5 cut(s)	30, 143, 264, 447, 533
TatI	WGTACW	1 cut(s)	588
TauI	GCSGC	1 cut(s)	457
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	5 cut(s)	26, 177, 396, 573, 648
Tru9I	TTAA	5 cut(s)	26, 177, 396, 573, 648
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	4 cut(s)	107, 323, 476, 578
TspDTI	ATGAA	4 cut(s)	17, 197, 502, 545
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	422, 616
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	1 cut(s)	92
ZraI	GACGTC	1 cut(s)	631
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.