RchiOBHm_Chr3g0491881

Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002020
Physical Location & Seq
Reverse (-)
38602661 .. 38604258
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45478

Sequence Viewer

Length: 288 bp
ATGATCTTGGATCTACAGCTCAAGGCATGGCTTGAGGATGGAAAAGATATCCGTCTAGGGGACTGGAAAGCTGCTGATGTCGAGATCCTGAATACCTTTCAATTGCTAACAGCTAAGCCTGTTGTTTACTTGGTGAAATGCTGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGGACTCTTATGAGTATCTATTTAAAGAGCTGAGCAAGTACAAATGGATCATTCTCAGGCTATAA

Protein Analysis

95

Amino Acids

11.16

Weight (kDa)

7.74

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YchF-GTPase_C PF06071 45 - 75 9e-12 Protein of unknown function (DUF933)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 154
AclWI GGATC 3 cut(s) 18, 79, 278
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 101, 162
AluBI AGCT 5 cut(s) 19, 71, 113, 176, 253
AluI AGCT 5 cut(s) 19, 71, 113, 176, 253
AlwI GGATC 3 cut(s) 18, 79, 278
ApeKI GCWGC 2 cut(s) 71, 176
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 145
AvaII GGWCC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 58, 163
BccI CCATC 2 cut(s) 32, 194
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 2 cut(s) 14, 177
BisI GCNGC 3 cut(s) 72, 155, 177
BlpI GCTNAGC 2 cut(s) 114, 254
BlsI GCNGC 3 cut(s) 73, 156, 178
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 2 cut(s) 168, 184
Bpu10I CCTNAGC 1 cut(s) 222
Bpu1102I GCTNAGC 2 cut(s) 114, 254
BpuEI CTTGAG 3 cut(s) 5, 53, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 43, 186
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 213, 245
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 2 cut(s) 58, 163
BslFI GGGAC 2 cut(s) 74, 196
BslI CCNNNNNNNGG 1 cut(s) 58
BsmFI GGGAC 2 cut(s) 74, 196
Bsp143I GATC 4 cut(s) 3, 10, 84, 270
Bsp1720I GCTNAGC 2 cut(s) 114, 254
BspACI CCGC 1 cut(s) 154
BspCNI CTCAG 2 cut(s) 214, 246
BspLI GGNNCC 2 cut(s) 168, 184
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 3 cut(s) 18, 79, 278
BsrI ACTGG 1 cut(s) 68
BssMI GATC 4 cut(s) 3, 10, 84, 270
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 4 cut(s) 114, 222, 254, 278
BstF5I GGATG 2 cut(s) 43, 186
BstKTI GATC 4 cut(s) 6, 13, 87, 273
BstMBI GATC 4 cut(s) 3, 10, 84, 270
BstMWI GCNNNNNNNGC 2 cut(s) 151, 173
BstSFI CTRYAG 2 cut(s) 14, 177
BstV1I GCAGC 2 cut(s) 58, 163
BstX2I RGATCY 2 cut(s) 10, 84
BstYI RGATCY 2 cut(s) 10, 84
BtsCI GGATG 2 cut(s) 43, 186
Cac8I GCNNGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 27
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 4 cut(s) 114, 222, 254, 278
DpnI GATC 4 cut(s) 5, 12, 86, 272
DpnII GATC 4 cut(s) 3, 10, 84, 270
DraI TTTAAA 1 cut(s) 247
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 183
EcoRV GATATC 1 cut(s) 49
FaeI CATG 1 cut(s) 30
FaiI YATR 4 cut(s) 28, 192, 234, 286
FaqI GGGAC 2 cut(s) 74, 196
FatI CATG 1 cut(s) 26
Fnu4HI GCNGC 3 cut(s) 72, 155, 177
FokI GGATG 2 cut(s) 50, 173
Fsp4HI GCNGC 3 cut(s) 72, 155, 177
FspBI CTAG 1 cut(s) 56
GluI GCNGC 3 cut(s) 72, 155, 177
Hin1II CATG 1 cut(s) 30
HinfI GANTC 2 cut(s) 210, 227
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 82, 88
Hpy8I GTNNAC 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 173
HpyF3I CTNAG 4 cut(s) 114, 222, 254, 278
Hsp92II CATG 1 cut(s) 30
Kzo9I GATC 4 cut(s) 3, 10, 84, 270
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 49, 101, 127, 132, 165, 265
Lsp1109I GCAGC 2 cut(s) 58, 163
MaeI CTAG 1 cut(s) 56
MalI GATC 4 cut(s) 5, 12, 86, 272
MboI GATC 4 cut(s) 3, 10, 84, 270
MfeI CAATTG 1 cut(s) 101
MflI RGATCY 2 cut(s) 10, 84
MluCI AATT 2 cut(s) 101, 147
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 4 cut(s) 28, 180, 200, 217
MseI TTAA 1 cut(s) 246
MunI CAATTG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 151, 173
NdeII GATC 4 cut(s) 3, 10, 84, 270
NlaIII CATG 1 cut(s) 30
NlaIV GGNNCC 2 cut(s) 168, 184
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 3 cut(s) 73, 156, 178
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 168, 184
PspPI GGNCC 1 cut(s) 183
PstI CTGCAG 1 cut(s) 181
PsuI RGATCY 2 cut(s) 10, 84
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 3 cut(s) 72, 155, 177
Sau3AI GATC 4 cut(s) 3, 10, 84, 270
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 221
SetI ASST 6 cut(s) 21, 73, 98, 115, 178, 255
SfcI CTRYAG 2 cut(s) 14, 177
SinI GGWCC 1 cut(s) 183
SmlI CTYRAG 3 cut(s) 20, 32, 171
SmoI CTYRAG 3 cut(s) 20, 32, 171
Sse9I AATT 2 cut(s) 101, 147
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 56
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 101, 147
TatI WGTACW 1 cut(s) 261
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseI GCWGC 2 cut(s) 71, 176
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 183
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.