MD10G1249000.v1.1

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
34202649 .. 34203407
759 bp
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UTR
Exon/CDS
Intron
MD10G1249000.v1.1.491

Sequence Viewer

Length: 759 bp
ATGATTAGAGATCAAAACATGGTTAATTTCCCTAGTGCTCCGAAAACAATCTCTCTTTTTTTGCTTTGTTTTCTCATCACCCTCCTTTTTGATCTTGCTTATGCTGATCCTGATCCTCCATACAAGTTGTGCTCAGATGTTCGCGGTTATGTCGAAAATGGTACGTTTCAGAAAAACCTCCAGAGCCTGCTCAATTCATTGCCTTCAAATGCTTCTGTTTCCAAGCTGTACAATACTTCCGCCGGAAATCAACCAGATAGAGTTTATGGCCTTTATATGTGCCTCAATTATTTTACGAATGAGATATGTCACAACTGCATCAACACCGCGCATTTAGACATTGTTAGGATTTGTCCCAACTCAACAGAATCAGTTGTGTGGGAGGAAACGTGCCAACTGCGCTACTCCGACGTGAAGTTCTATGGTGAATTGAATGTGGCAGACAACATTGTGTCCGCTAACAAGAAAAACGTTTCAGACCCAAAAAAGGTCGAGAATACTGTAAAGGAGAAGCTGAGGGAGTTTGCGAAGCAAGCAGCATATGATGCTTCAGCGAAAATGTATGCTACTGGAGATGTACCATTTGAAGATAAAGTGATATATGCTCTTGTGCAGTGCACTAGAGACTTATCTGGAGATGACTGTGACAAATGCCTTCAGCACGCCATAGAAGACGTTTTGAGAAAGTATTATTTCTCCGTTGGCGCGGCTTATGAGCCGGAGTTGCTATCTGAGGTACGAGTTGTATGGCTTCTATAA

Protein Analysis

253

Amino Acids

28.54

Weight (kDa)

5.07

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 44 - 137 1.1e-20 Salt stress response/antifungal
Stress-antifung PF01657 157 - 225 1.4e-07 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 144, 329, 707
AciI CCGC 5 cut(s) 144, 240, 327, 456, 707
AclI AACGTT 1 cut(s) 471
AclWI GGATC 2 cut(s) 101, 107
AcuI CTGAAG 2 cut(s) 534, 641
AfaI GTAC 4 cut(s) 163, 230, 579, 738
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 3 cut(s) 207, 433, 587
AjiI CACGTC 1 cut(s) 412
AluBI AGCT 2 cut(s) 226, 514
AluI AGCT 2 cut(s) 226, 514
Alw21I GWGCWC 3 cut(s) 40, 134, 620
Alw26I GTCTC 1 cut(s) 618
Alw44I GTGCAC 1 cut(s) 616
AlwI GGATC 2 cut(s) 101, 107
AlwNI CAGNNNCTG 1 cut(s) 187
AoxI GGCC 1 cut(s) 268
ApaLI GTGCAC 1 cut(s) 616
ApeKI GCWGC 1 cut(s) 536
AspLEI GCGC 3 cut(s) 331, 402, 707
AsuHPI GGTGA 2 cut(s) 70, 437
BaeGI GKGCMC 1 cut(s) 620
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 3 cut(s) 40, 134, 620
BbvCI CCTCAGC 1 cut(s) 515
BbvI GCAGC 1 cut(s) 548
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 2 cut(s) 33, 621
BisI GCNGC 2 cut(s) 537, 708
BlsI GCNGC 2 cut(s) 538, 709
BmgBI CACGTC 1 cut(s) 412
BmsI GCATC 2 cut(s) 327, 535
BpiI GAAGAC 1 cut(s) 678
BpmI CTGGAG 3 cut(s) 164, 591, 654
Bpu10I CCTNAGC 1 cut(s) 515
BsaBI GATNNNNATC 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 487
Bse1I ACTGG 1 cut(s) 574
Bse3DI GCAATG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 3 cut(s) 147, 506, 723
BseNI ACTGG 1 cut(s) 574
BseSI GKGCMC 1 cut(s) 620
BseXI GCAGC 1 cut(s) 548
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 3 cut(s) 144, 329, 707
BshFI GGCC 1 cut(s) 270
BsiHKAI GWGCWC 3 cut(s) 40, 134, 620
BsiSI CCGG 2 cut(s) 243, 719
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 1 cut(s) 618
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 1 cut(s) 270
Bsp1286I GDGCHC 3 cut(s) 40, 134, 620
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 4 cut(s) 10, 91, 106, 112
BspACI CCGC 5 cut(s) 144, 240, 327, 456, 707
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 3 cut(s) 146, 507, 724
BspFNI CGCG 3 cut(s) 144, 329, 707
BspPI GGATC 2 cut(s) 101, 107
BsrDI GCAATG 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 1 cut(s) 574
BssMI GATC 4 cut(s) 10, 91, 106, 112
Bst4CI ACNGT 2 cut(s) 502, 644
BstAPI GCANNNNNTGC 1 cut(s) 545
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 3 cut(s) 188, 534, 663
BstDEI CTNAG 3 cut(s) 133, 515, 732
BstFNI CGCG 3 cut(s) 144, 329, 707
BstHHI GCGC 3 cut(s) 331, 402, 707
BstKTI GATC 4 cut(s) 13, 94, 109, 115
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 4 cut(s) 10, 91, 106, 112
BstMWI GCNNNNNNNGC 4 cut(s) 399, 533, 545, 724
BstSLI GKGCMC 1 cut(s) 620
BstUI CGCG 3 cut(s) 144, 329, 707
BstV1I GCAGC 1 cut(s) 548
BstV2I GAAGAC 1 cut(s) 678
BsuRI GGCC 1 cut(s) 270
BtrI CACGTC 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 620
BtsIMutI CAGTG 1 cut(s) 620
Cac8I GCNNGC 3 cut(s) 188, 534, 663
CaiI CAGNNNCTG 1 cut(s) 187
CfoI GCGC 3 cut(s) 331, 402, 707
Csp6I GTAC 4 cut(s) 162, 229, 578, 737
CviAII CATG 1 cut(s) 19
CviJI RGCY 7 cut(s) 186, 226, 270, 514, 710, 718, 751
CviKI_1 RGCY 7 cut(s) 186, 226, 270, 514, 710, 718, 751
CviQI GTAC 4 cut(s) 162, 229, 578, 737
DdeI CTNAG 3 cut(s) 133, 515, 732
DpnI GATC 4 cut(s) 12, 93, 108, 114
DpnII GATC 4 cut(s) 10, 91, 106, 112
EciI GGCGGA 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 534, 641
FaeI CATG 1 cut(s) 22
FaqI GGGAC 1 cut(s) 339
FatI CATG 1 cut(s) 18
FauNDI CATATG 1 cut(s) 541
Fnu4HI GCNGC 2 cut(s) 537, 708
Fsp4HI GCNGC 2 cut(s) 537, 708
FspBI CTAG 2 cut(s) 33, 621
GlaI GCGC 3 cut(s) 330, 401, 706
GluI GCNGC 2 cut(s) 537, 708
GsuI CTGGAG 3 cut(s) 164, 591, 654
HaeIII GGCC 1 cut(s) 270
HapII CCGG 2 cut(s) 243, 719
HhaI GCGC 3 cut(s) 331, 402, 707
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 3 cut(s) 329, 400, 705
HinP1I GCGC 3 cut(s) 329, 400, 705
HinfI GANTC 1 cut(s) 368
HpaII CCGG 2 cut(s) 243, 719
HphI GGTGA 2 cut(s) 70, 437
Hpy166II GTNNAC 1 cut(s) 618
Hpy188I TCNGA 6 cut(s) 42, 136, 171, 409, 478, 733
Hpy188III TCNNGA 4 cut(s) 110, 181, 493, 633
Hpy8I GTNNAC 1 cut(s) 618
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 2 cut(s) 213, 665
HpyCH4III ACNGT 2 cut(s) 502, 644
HpyCH4IV ACGT 5 cut(s) 164, 389, 411, 471, 675
HpyCH4V TGCA 3 cut(s) 318, 613, 618
HpyF10VI GCNNNNNNNGC 4 cut(s) 399, 533, 545, 724
HpyF3I CTNAG 3 cut(s) 133, 515, 732
HpySE526I ACGT 5 cut(s) 164, 389, 411, 471, 675
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 3 cut(s) 329, 400, 705
Kzo9I GATC 4 cut(s) 10, 91, 106, 112
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 8 cut(s) 123, 194, 200, 256, 267, 555, 618, 732
Lsp1109I GCAGC 1 cut(s) 548
LweI GCATC 2 cut(s) 327, 535
MaeI CTAG 2 cut(s) 33, 621
MaeII ACGT 5 cut(s) 164, 389, 411, 471, 675
MaeIII GTNAC 2 cut(s) 308, 644
MalI GATC 4 cut(s) 12, 93, 108, 114
MboI GATC 4 cut(s) 10, 91, 106, 112
MboII GAAGA 2 cut(s) 599, 683
MhlI GDGCHC 3 cut(s) 40, 134, 620
MluCI AATT 4 cut(s) 25, 193, 286, 428
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 7 cut(s) 92, 126, 188, 293, 376, 510, 727
MseI TTAA 1 cut(s) 24
MspI CCGG 2 cut(s) 243, 719
MvnI CGCG 3 cut(s) 144, 329, 707
MwoI GCNNNNNNNGC 4 cut(s) 399, 533, 545, 724
NdeI CATATG 1 cut(s) 541
NdeII GATC 4 cut(s) 10, 91, 106, 112
NlaIII CATG 1 cut(s) 22
NmuCI GTSAC 2 cut(s) 308, 644
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 2 cut(s) 538, 709
Psp1406I AACGTT 1 cut(s) 471
PstNI CAGNNNCTG 1 cut(s) 187
RsaI GTAC 4 cut(s) 163, 230, 579, 738
RsaNI GTAC 4 cut(s) 162, 229, 578, 737
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 2 cut(s) 537, 708
Sau3AI GATC 4 cut(s) 10, 91, 106, 112
SduI GDGCHC 3 cut(s) 40, 134, 620
SfaNI GCATC 2 cut(s) 327, 535
Sse9I AATT 4 cut(s) 25, 193, 286, 428
SsiI CCGC 5 cut(s) 144, 240, 327, 456, 707
SspMI CTAG 2 cut(s) 33, 621
TaaI ACNGT 2 cut(s) 502, 644
TaiI ACGT 5 cut(s) 167, 392, 414, 474, 678
TaqI TCGA 2 cut(s) 153, 492
TasI AATT 4 cut(s) 25, 193, 286, 428
TatI WGTACW 1 cut(s) 228
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 620
TseFI GTSAC 2 cut(s) 308, 644
TseI GCWGC 1 cut(s) 536
Tsp45I GTSAC 2 cut(s) 308, 644
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 688
TspRI CASTG 1 cut(s) 620
VneI GTGCAC 1 cut(s) 616
XspI CTAG 2 cut(s) 33, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.