Rh5DG036800

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
2576680 .. 2579282
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG036800.1

Sequence Viewer

Length: 1230 bp
ATGTGTACATATCTTCTTTTCAAAGATTGTCCATCCACAAACTATACTGCCAAGAGTTCATTTGAAAATAATCTCAAGCTACTCCTCGACTCATTGTCTTCCAATACTTCAATCTATGGTGGTTTCTACAATGACACGATTGGCAATAGCAGTGACCACGTCTATGGACAAGCACTTTGTAGAGGGGATGTAAACTCCACAGTTTGTCAGAGCTGTGTTCATGATGCAAGCCAGGAAATCAAGAGTTGTAAAACTCAAGAAGCAATCATATGGTATGATCTATGTCAAGTTCAGTATTCCTCTGCCCCGTTCTTTTCAATGATGTTATATGGTGGGAAGCTTCCTGAGAAGAATAAGCAGGAGAAGAATGTAACAAATCCCAAGCAGTTATTTGATGTTTTGAATAATTTAATGACAAAGCTCTTGGACCAGACTGCCTATACTTCTAAGGATATGTTTGCAACCGGCTATATGAAATTTTCAGGAAAGCAATCTATTTATGGCCTACAACAGTGCACTAGAGACATTTCTGAAGATGAATGCCATAACTGTTTGAATTCTGCTCGTGAGGAGCTTCAGGTATGCTGCTCTGCTCGCGAAGGTGGAACTGTTGTTAGTAGGAATTGTAATGTGAGGTTTGAGCTCTACCAATTTTTCAACGACATTTCCAAAGGGGACAAGAGGAAGAGTTGGAAGGTGGTCGTTATATGTGTATCCACAATACTATCAGCAGTTTTCATTGTACTTTGTGCTGTCTATCTTCGGCGGGGAAGGGAATTGGAAAATGTCCAAGATGAAGAAAGAAGCCAGCATGGACTATTACCTGAATTATTAAACCCCACTGGAGTCACAATCATTGAAGAAGACAAAATGACTAGTGGGTTCTACCTCACGGAACATGCCAAGACGCTCGTTGAATACGCATGGACACTATGGAAGCATGGAAAAGGGTCGGAATTTGTGGAACCTTTGTTAATGGAATGTTGCCCGAAAGCAGACGTTTTGAAATACTTGCAGATTGCGCTTTTATGTGTCCAGGAAGACCCTGAAGAAAGACCAACAATGTCATCTGTGGTTGTGTTGCTGGGAAATGATGACTCAATTGGTCTTCCTGAACCAAAGAAACCAGCCATATTTGCAATAGGTAGAGTTGCTCCAATAAACGAGTCTACACATACCGCTAATCCTACTTCAAATCAGCTCACTCTTTCCGTCATTTCACCGAGGTGA

Protein Analysis

409

Amino Acids

45.86

Weight (kDa)

5.52

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 10 - 101 3.6e-23 Salt stress response/antifungal
Stress-antifung PF01657 120 - 215 7.1e-13 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1169
AccII CGCG 1 cut(s) 597
AciI CCGC 2 cut(s) 766, 1179
AcsI RAATTY 3 cut(s) 476, 556, 956
AcuI CTGAAG 3 cut(s) 552, 560, 1068
AfaI GTAC 2 cut(s) 7, 744
AhdI GACNNNNNGTC 1 cut(s) 94
AhlI ACTAGT 1 cut(s) 875
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 2 cut(s) 231, 1035
AleI CACNNNNGTG 1 cut(s) 1225
AluBI AGCT 7 cut(s) 79, 213, 340, 421, 574, 643, 1201
AluI AGCT 7 cut(s) 79, 213, 340, 421, 574, 643, 1201
Alw21I GWGCWC 2 cut(s) 518, 645
Alw26I GTCTC 1 cut(s) 516
Alw44I GTGCAC 1 cut(s) 514
AoxI GGCC 1 cut(s) 502
ApaLI GTGCAC 1 cut(s) 514
ApeKI GCWGC 1 cut(s) 585
ApoI RAATTY 3 cut(s) 476, 556, 956
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspLEI GCGC 1 cut(s) 1024
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 1 cut(s) 1212
AvaII GGWCC 1 cut(s) 427
BaeGI GKGCMC 1 cut(s) 518
BanII GRGCYC 1 cut(s) 645
BauI CACGAG 1 cut(s) 564
BbsI GAAGAC 4 cut(s) 90, 870, 1047, 1100
Bbv12I GWGCWC 2 cut(s) 518, 645
BbvI GCAGC 1 cut(s) 572
BccI CCATC 1 cut(s) 40
BciT130I CCWGG 2 cut(s) 233, 1037
BciVI GTATCC 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 516
BcuI ACTAGT 1 cut(s) 875
BfaI CTAG 2 cut(s) 519, 876
BfuI GTATCC 1 cut(s) 724
BisI GCNGC 1 cut(s) 586
BlsI GCNGC 1 cut(s) 587
Bme1390I CCNGG 2 cut(s) 233, 1037
Bme18I GGWCC 1 cut(s) 427
BmeRI GACNNNNNGTC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 427
BmiI GGNNCC 1 cut(s) 966
BmrFI CCNGG 2 cut(s) 233, 1037
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 4 cut(s) 90, 870, 1047, 1100
BpmI CTGGAG 1 cut(s) 864
BpuEI CTTGAG 2 cut(s) 59, 240
BsaJI CCNNGG 1 cut(s) 1223
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 847
BseBI CCWGG 2 cut(s) 233, 1037
BseDI CCNNGG 1 cut(s) 1223
BseGI GGATG 2 cut(s) 32, 193
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 847
BseRI GAGGAG 2 cut(s) 74, 584
BseSI GKGCMC 1 cut(s) 518
BseXI GCAGC 1 cut(s) 572
BseYI CCCAGC 1 cut(s) 1084
Bsh1236I CGCG 1 cut(s) 597
BshFI GGCC 1 cut(s) 504
BsiHKAI GWGCWC 2 cut(s) 518, 645
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 1 cut(s) 689
BsmAI GTCTC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 689
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 1 cut(s) 504
Bsp1286I GDGCHC 2 cut(s) 518, 645
Bsp1407I TGTACA 1 cut(s) 5
Bsp143I GATC 1 cut(s) 277
Bsp68I TCGCGA 1 cut(s) 597
BspACI CCGC 2 cut(s) 766, 1179
BspANI GGCC 1 cut(s) 504
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 597
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 966
BsrFI RCCGGY 1 cut(s) 464
BsrGI TGTACA 1 cut(s) 5
BsrI ACTGG 1 cut(s) 847
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 1223
BssMI GATC 1 cut(s) 277
BssSI CACGAG 1 cut(s) 564
Bst2BI CACGAG 1 cut(s) 564
Bst2UI CCWGG 2 cut(s) 233, 1037
Bst4CI ACNGT 4 cut(s) 202, 513, 551, 610
Bst6I CTCTTC 1 cut(s) 680
BstAUI TGTACA 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 229, 595, 809
BstDEI CTNAG 2 cut(s) 345, 447
BstF5I GGATG 2 cut(s) 32, 193
BstFNI CGCG 1 cut(s) 597
BstHHI GCGC 1 cut(s) 1024
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 3 cut(s) 594, 1021, 1136
BstNI CCWGG 2 cut(s) 233, 1037
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 2 cut(s) 231, 1035
BstSLI GKGCMC 1 cut(s) 518
BstUI CGCG 1 cut(s) 597
BstV1I GCAGC 1 cut(s) 572
BstV2I GAAGAC 4 cut(s) 90, 870, 1047, 1100
BstXI CCANNNNNNTGG 1 cut(s) 164
BsuI GTATCC 1 cut(s) 724
BsuRI GGCC 1 cut(s) 504
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 2 cut(s) 32, 193
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 3 cut(s) 157, 518, 840
BtuMI TCGCGA 1 cut(s) 597
Cac8I GCNNGC 3 cut(s) 229, 595, 809
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 1024
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 427
CseI GACGC 1 cut(s) 916
Csp6I GTAC 2 cut(s) 6, 743
CviAII CATG 5 cut(s) 221, 812, 899, 924, 941
CviQI GTAC 2 cut(s) 6, 743
DdeI CTNAG 2 cut(s) 345, 447
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DriI GACNNNNNGTC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 680
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 680
Ecl136II GAGCTC 1 cut(s) 643
Eco24I GRGCYC 1 cut(s) 645
Eco47I GGWCC 1 cut(s) 427
Eco53kI GAGCTC 1 cut(s) 643
Eco57I CTGAAG 3 cut(s) 552, 560, 1068
EcoICRI GAGCTC 1 cut(s) 643
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 2 cut(s) 231, 1035
EcoT38I GRGCYC 1 cut(s) 645
FaeI CATG 5 cut(s) 224, 815, 902, 927, 944
FaqI GGGAC 1 cut(s) 689
FatI CATG 5 cut(s) 220, 811, 898, 923, 940
FauI CCCGC 1 cut(s) 759
FauNDI CATATG 1 cut(s) 269
FblI GTMKAC 1 cut(s) 1169
Fnu4HI GCNGC 1 cut(s) 586
FokI GGATG 2 cut(s) 19, 200
FriOI GRGCYC 1 cut(s) 645
Fsp4HI GCNGC 1 cut(s) 586
FspBI CTAG 2 cut(s) 519, 876
GlaI GCGC 1 cut(s) 1023
GluI GCNGC 1 cut(s) 586
GsaI CCCAGC 1 cut(s) 1088
GsuI CTGGAG 1 cut(s) 864
HaeIII GGCC 1 cut(s) 504
HapII CCGG 1 cut(s) 465
HgaI GACGC 1 cut(s) 916
HhaI GCGC 1 cut(s) 1024
Hin1II CATG 5 cut(s) 224, 815, 902, 927, 944
Hin6I GCGC 1 cut(s) 1022
HinP1I GCGC 1 cut(s) 1022
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 4 cut(s) 89, 846, 1097, 1166
HpaII CCGG 1 cut(s) 465
HphI GGTGA 1 cut(s) 1212
Hpy166II GTNNAC 4 cut(s) 6, 193, 516, 1170
Hpy188I TCNGA 3 cut(s) 210, 532, 955
Hpy188III TCNNGA 8 cut(s) 221, 241, 257, 344, 483, 566, 596, 1112
Hpy8I GTNNAC 4 cut(s) 6, 193, 516, 1170
HpyAV CCTTC 3 cut(s) 593, 688, 765
HpyCH4III ACNGT 4 cut(s) 202, 513, 551, 610
HpyCH4IV ACGT 2 cut(s) 159, 999
HpyCH4V TGCA 5 cut(s) 227, 461, 516, 1015, 1139
HpyF10VI GCNNNNNNNGC 3 cut(s) 594, 1021, 1136
HpyF3I CTNAG 2 cut(s) 345, 447
HpySE526I ACGT 2 cut(s) 159, 999
Hsp92II CATG 5 cut(s) 224, 815, 902, 927, 944
HspAI GCGC 1 cut(s) 1022
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 2 cut(s) 571, 1159
Lsp1109I GCAGC 1 cut(s) 572
LweI GCATC 1 cut(s) 214
MaeI CTAG 2 cut(s) 519, 876
MaeII ACGT 2 cut(s) 159, 999
MaeIII GTNAC 3 cut(s) 152, 370, 847
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MfeI CAATTG 1 cut(s) 1101
MhlI GDGCHC 2 cut(s) 518, 645
MluCI AATT 9 cut(s) 406, 476, 556, 622, 650, 776, 827, 956, 1101
MlyI GAGTC 4 cut(s) 83, 855, 1091, 1175
MmeI TCCRAC 2 cut(s) 671, 933
MnlI CCTC 8 cut(s) 95, 176, 310, 562, 627, 675, 899, 1218
MseI TTAA 3 cut(s) 410, 833, 974
MslI CAYNNNNRTG 2 cut(s) 162, 1225
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 2 cut(s) 233, 1037
MunI CAATTG 1 cut(s) 1101
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 2 cut(s) 233, 1037
MvnI CGCG 1 cut(s) 597
MwoI GCNNNNNNNGC 3 cut(s) 594, 1021, 1136
NdeI CATATG 1 cut(s) 269
NdeII GATC 1 cut(s) 277
NlaIII CATG 5 cut(s) 224, 815, 902, 927, 944
NlaIV GGNNCC 1 cut(s) 966
NmuCI GTSAC 2 cut(s) 152, 847
NruI TCGCGA 1 cut(s) 597
NspI RCATGY 1 cut(s) 902
OliI CACNNNNGTG 1 cut(s) 1225
PagI TCATGA 1 cut(s) 220
PctI GAATGC 1 cut(s) 545
PflFI GACNNNGTC 1 cut(s) 158
PfoI TCCNGGA 1 cut(s) 1035
PkrI GCNGC 1 cut(s) 587
PleI GAGTC 4 cut(s) 83, 854, 1091, 1174
PpsI GAGTC 4 cut(s) 83, 854, 1091, 1174
Psp124BI GAGCTC 1 cut(s) 645
Psp6I CCWGG 2 cut(s) 231, 1035
PspFI CCCAGC 1 cut(s) 1084
PspGI CCWGG 2 cut(s) 231, 1035
PspN4I GGNNCC 1 cut(s) 966
PspPI GGNCC 1 cut(s) 427
PsyI GACNNNGTC 1 cut(s) 158
RruI TCGCGA 1 cut(s) 597
RsaI GTAC 2 cut(s) 7, 744
RsaNI GTAC 2 cut(s) 6, 743
RseI CAYNNNNRTG 2 cut(s) 162, 1225
SacI GAGCTC 1 cut(s) 645
SaqAI TTAA 3 cut(s) 410, 833, 974
SatI GCNGC 1 cut(s) 586
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 427
SchI GAGTC 4 cut(s) 83, 855, 1091, 1175
ScrFI CCNGG 2 cut(s) 233, 1037
SduI GDGCHC 2 cut(s) 518, 645
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 2 cut(s) 162, 1225
SmlI CTYRAG 2 cut(s) 74, 255
SmoI CTYRAG 2 cut(s) 74, 255
SpeI ACTAGT 1 cut(s) 875
Sse9I AATT 9 cut(s) 406, 476, 556, 622, 650, 776, 827, 956, 1101
SsiI CCGC 2 cut(s) 766, 1179
SspMI CTAG 2 cut(s) 519, 876
SstI GAGCTC 1 cut(s) 645
StyD4I CCNGG 2 cut(s) 231, 1035
TaaI ACNGT 4 cut(s) 202, 513, 551, 610
TaiI ACGT 2 cut(s) 162, 1002
TaqI TCGA 1 cut(s) 87
TasI AATT 9 cut(s) 406, 476, 556, 622, 650, 776, 827, 956, 1101
TatI WGTACW 2 cut(s) 5, 742
Tru1I TTAA 3 cut(s) 410, 833, 974
Tru9I TTAA 3 cut(s) 410, 833, 974
TscAI CASTG 3 cut(s) 157, 518, 847
TseFI GTSAC 2 cut(s) 152, 847
TseI GCWGC 1 cut(s) 585
Tsp45I GTSAC 2 cut(s) 152, 847
TspDTI ATGAA 6 cut(s) 48, 209, 488, 552, 727, 810
TspGWI ACGGA 2 cut(s) 908, 1201
TspRI CASTG 3 cut(s) 157, 518, 847
Tth111I GACNNNGTC 1 cut(s) 158
VneI GTGCAC 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 427
XapI RAATTY 3 cut(s) 476, 556, 956
XceI RCATGY 1 cut(s) 902
XmiI GTMKAC 1 cut(s) 1169
XspI CTAG 2 cut(s) 519, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.