Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8256217.1

Orthogroup ID

OG0000635

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 431

Gene Structure 430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8256217.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 430 bp

atggacgccctttcagttatgcttttcatgattctaccacttttgttaccagctagcgtttctggtgcagatcctcttgacactttttgctcacctgatgccagtatctacactcctagcagccaatttgaaagtaatctcaagcagctccttgagtcattgtcattcaacacttccatctccagtggtttctacaatgacacaatcggcactggccgtgacagagtatatggacaaacactttgtagaggggatgtgaactccacggtttgtcagaaatgtgtaagtgatgcaagccgggaaatcttcaacaattgtaactctacagatgcattgatctggtatgaactatgtcaagttcgctattcctaccagatgttcttttcgtcgatgtcttatactgggaagtacccggcccagaatgatcagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

143

Amino Acids

15.91

Weight (kDa)

4.31

Isoelectric Point (pI)

25.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica	MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica	Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis	pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis	RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata	RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora	Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa	Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha	Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana	Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	131, 169, 310
AluBI	AGCT	2 cut(s)	53, 148
AluI	AGCT	2 cut(s)	53, 148
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	214, 414
ApeKI	GCWGC	2 cut(s)	120, 145
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	2 cut(s)	299, 413
AsuHPI	GGTGA	1 cut(s)	84
AsuNHI	GCTAGC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	132, 157
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	201
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	2 cut(s)	299, 413
BfaI	CTAG	2 cut(s)	54, 117
BfmI	CTRYAG	1 cut(s)	324
BisI	GCNGC	2 cut(s)	121, 146
BlsI	GCNGC	2 cut(s)	122, 147
Bme1390I	CCNGG	2 cut(s)	299, 413
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	299, 413
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	3 cut(s)	88, 280, 319
BmtI	GCTAGC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	166
BpuEI	CTTGAG	2 cut(s)	125, 173
BpuMI	CCSGG	2 cut(s)	299, 413
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	264
Bse1I	ACTGG	4 cut(s)	102, 183, 217, 406
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	259
BseNI	ACTGG	4 cut(s)	102, 183, 217, 406
BseXI	GCAGC	2 cut(s)	132, 157
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	2 cut(s)	216, 416
BsiSI	CCGG	2 cut(s)	298, 413
BsnI	GGCC	2 cut(s)	216, 416
Bsp143I	GATC	3 cut(s)	70, 336, 424
BspANI	GGCC	2 cut(s)	216, 416
BspHI	TCATGA	1 cut(s)	27
BspOI	GCTAGC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	65
BsrI	ACTGG	4 cut(s)	102, 183, 217, 406
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	70, 336, 424
BssNI	GRCGYC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	55, 295
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	3 cut(s)	73, 339, 427
BstMBI	GATC	3 cut(s)	70, 336, 424
BstSCI	CCNGG	2 cut(s)	297, 411
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	132, 157
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	216, 416
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	190, 210
Cac8I	GCNNGC	2 cut(s)	55, 295
CciI	TCATGA	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	6 cut(s)	53, 123, 148, 216, 297, 416
CviKI_1	RGCY	6 cut(s)	53, 123, 148, 216, 297, 416
CviQI	GTAC	1 cut(s)	409
DpnI	GATC	3 cut(s)	72, 338, 426
DpnII	GATC	3 cut(s)	70, 336, 424
EaeI	YGGCCR	1 cut(s)	214
EcoT22I	ATGCAT	1 cut(s)	334
FaeI	CATG	1 cut(s)	31
FaiI	YATR	7 cut(s)	20, 29, 229, 231, 345, 352, 399
FatI	CATG	1 cut(s)	27
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	121, 146
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	121, 146
FspBI	CTAG	2 cut(s)	54, 117
GluI	GCNGC	2 cut(s)	121, 146
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	216, 416
HapII	CCGG	2 cut(s)	298, 413
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	2 cut(s)	31, 155
HpaII	CCGG	2 cut(s)	298, 413
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	2 cut(s)	28, 77
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	391
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	68, 293, 332
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	70, 336, 424
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	2 cut(s)	132, 157
LweI	GCATC	3 cut(s)	88, 280, 319
MaeI	CTAG	2 cut(s)	54, 117
MaeIII	GTNAC	3 cut(s)	45, 218, 317
MalI	GATC	3 cut(s)	72, 338, 426
MboI	GATC	3 cut(s)	70, 336, 424
MboII	GAAGA	1 cut(s)	298
MfeI	CAATTG	1 cut(s)	313
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	2 cut(s)	125, 313
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	2 cut(s)	84, 242
Mph1103I	ATGCAT	1 cut(s)	334
MspI	CCGG	2 cut(s)	298, 413
MspR9I	CCNGG	2 cut(s)	299, 413
MunI	CAATTG	1 cut(s)	313
NciI	CCSGG	2 cut(s)	299, 413
NdeII	GATC	3 cut(s)	70, 336, 424
NheI	GCTAGC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	334
PagI	TCATGA	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	122, 147
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SatI	GCNGC	2 cut(s)	121, 146
Sau3AI	GATC	3 cut(s)	70, 336, 424
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	299, 413
SetI	ASST	3 cut(s)	55, 97, 150
SfaNI	GCATC	3 cut(s)	88, 280, 319
SfcI	CTRYAG	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	140, 152
SmoI	CTYRAG	2 cut(s)	140, 152
Sse9I	AATT	2 cut(s)	125, 313
SspMI	CTAG	2 cut(s)	54, 117
StyD4I	CCNGG	2 cut(s)	297, 411
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	389
TasI	AATT	2 cut(s)	125, 313
TfiI	GAWTC	1 cut(s)	31
TscAI	CASTG	2 cut(s)	190, 217
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	2 cut(s)	120, 145
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	16, 360
TspRI	CASTG	2 cut(s)	190, 217
XspI	CTAG	2 cut(s)	54, 117
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.