Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000635

Physical Location & Seq

Genomic Coordinates Reverse (-)

92931712 .. 92932213

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTCTCCTGAATATGCAATGGAGGGATTATATTCTTTCAAGTCTGATGTCTTTAGCTTTGGAGTACTCCTTCTTGAGATAATAACTGGGAGAAAGAACGCCAAGCGTGCCAGCCTCCCATCATATGCATGGAAATTATGGAATGAAGGAAAAGGACTGGAGCTAATCGATCCATTTCTGGTTGGTTACTGTGATTCAGATGAGTTTTTAAGATATCTCCATATTGGATTGTTGTGTGTTCAAGAAGATGCATATGACAGGCCAACCATGTCTTCTGCCATTTTAATGTTGAAAAGTGAAACTGTAAATCTTAGCCTACCTGGAAAACCTGCCTTCTCCATTGGAACATTCAGTGATGTCCAAAATATGGCTGGTGCTGTTAGTAGCTCTTATAATGGACTAACAATTTCCAACATAGCGCCACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

142

Amino Acids

15.66

Weight (kDa)

5.08

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 91	1.7e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica	MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica	Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis	pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis	RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata	RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora	Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa	Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha	Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana	Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	367
AclWI	GGATC	1 cut(s)	164
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	3 cut(s)	40, 242, 292
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	256, 288
AluBI	AGCT	3 cut(s)	57, 163, 387
AluI	AGCT	3 cut(s)	57, 163, 387
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	264
BccI	CCATC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	337
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	91, 162
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	91, 162
BshFI	GGCC	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	91, 162
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	191, 304, 426
BstC8I	GCNNGC	2 cut(s)	108, 112
BstDEI	CTNAG	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	422
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	262
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	108, 112
CfoI	GCGC	1 cut(s)	421
ClaI	ATCGAT	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	2 cut(s)	129, 268
CviJI	RGCY	7 cut(s)	57, 114, 163, 262, 315, 371, 387
CviKI_1	RGCY	7 cut(s)	57, 114, 163, 262, 315, 371, 387
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	319
EcoRV	GATATC	1 cut(s)	215
EcoT22I	ATGCAT	2 cut(s)	130, 253
FaeI	CATG	2 cut(s)	132, 271
FatI	CATG	2 cut(s)	128, 267
FauNDI	CATATG	2 cut(s)	124, 253
GlaI	GCGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	132, 271
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	1 cut(s)	194
Hpy188I	TCNGA	2 cut(s)	46, 199
Hpy188III	TCNNGA	3 cut(s)	8, 74, 242
HpyAV	CCTTC	3 cut(s)	80, 140, 343
HpyCH4III	ACNGT	3 cut(s)	191, 304, 426
HpyCH4V	TGCA	3 cut(s)	17, 128, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	311
Hsp92II	CATG	2 cut(s)	132, 271
HspAI	GCGC	1 cut(s)	419
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	160
LweI	GCATC	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	257, 264
MluCI	AATT	2 cut(s)	134, 405
MnlI	CCTC	2 cut(s)	16, 125
Mph1103I	ATGCAT	2 cut(s)	130, 253
MseI	TTAA	2 cut(s)	209, 284
MslI	CAYNNNNRTG	2 cut(s)	127, 284
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeI	CATATG	2 cut(s)	124, 253
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	132, 271
NsiI	ATGCAT	2 cut(s)	130, 253
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	367
PsiI	TTATAA	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	2 cut(s)	127, 284
SaqAI	TTAA	2 cut(s)	209, 284
Sau3AI	GATC	1 cut(s)	169
ScaI	AGTACT	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	5 cut(s)	59, 165, 322, 331, 389
SfaNI	GCATC	1 cut(s)	238
SmiMI	CAYNNNNRTG	2 cut(s)	127, 284
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	134, 405
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	3 cut(s)	191, 304, 426
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	134, 405
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	209, 284
Tru9I	TTAA	2 cut(s)	209, 284
TscAI	CASTG	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	358
Van91I	CCANNNNNTGG	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	2 cut(s)	126, 368
ZrmI	AGTACT	1 cut(s)	66
Zsp2I	ATGCAT	2 cut(s)	130, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.