Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000635

Physical Location & Seq

Genomic Coordinates Forward (+)

2663997 .. 2674066

Gene Structure 10070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG040600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACTCTCCTTTTTGAGCTTGCTTGTGCTGCACAACCTTATGATCTCCCTCCTTATAATATGTGCTCAGTTGTTACTAGTAACTCTACAGGCCACAATACGTTTCAAGAAAACCTTGAGATTTTACTCAATTTATTACCTTCCAACGCTTCTGTTTCCAAGTCGTACAATGGTTCAATTGGAAATGAGCCAGATAGAGTTTACGCTCTCTATATGTGCCTCGACTTTGTTTCAAACCATACATGTCACAAGTGCATAGAGGCAGCACAATCAAAAATTATGAAACTCTGTCCTAAGTCAAAAGAAGCAATTGTATGGGACGAATGGTGCCAGCTGCGCTACTCCAATGAGAATTTTTTTGGCAGATTAAATGTATCGGACAACAACGTTCTTCAAGTCAATCCACAGAATATTTCAGAGCAGCCAGAAAAGTTTAAGTCTGTTGTGAATCAAAAGCTGAGTGAACTCGCTAAGAAAGCGGCTTATAATGATTCTTCTCCTAAGATGTATGCTACTGGAGAAGTGAATTTTGGAGATGAAGTGATATATGCTCTTGTGCAGTGTACTGCCGATTTATCTGAAGGTGACTGTGACAAATGCCTTCAGACAGCCACAGAAGACGTTTTAAGAGAATATTTCTTCTCCATGGGTGCAAGACTTTTCAGTCATAGTTGTTTTCTGAGGTATGAGTTATACCCATTCTACAGTTATCCAACACAAGCTTCTAAGGGTAGGCCAGGATTTAGTCTATCAACTACCCTGTTTGTTTCACTGGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase_Tyr Stress-antifung

Protein Analysis

260

Amino Acids

29.3

Weight (kDa)

5.06

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	22 - 117	2.2e-20	Salt stress response/antifungal
Stress-antifung	PF01657	137 - 231	9.3e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica	MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica	Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis	pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis	RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata	RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora	Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa	Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha	Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana	Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	57, 486
AasI	GACNNNNNNGTC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	327
AciI	CCGC	1 cut(s)	479
AclI	AACGTT	1 cut(s)	387
AcsI	RAATTY	2 cut(s)	352, 526
AcuI	CTGAAG	2 cut(s)	587, 600
AfaI	GTAC	2 cut(s)	167, 565
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	4 cut(s)	107, 177, 234, 395
AhlI	ACTAGT	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	736
AjuI	GAANNNNNNNTTGG	4 cut(s)	513, 545, 706, 738
AluBI	AGCT	4 cut(s)	19, 334, 457, 722
AluI	AGCT	4 cut(s)	19, 334, 457, 722
Alw21I	GWGCWC	1 cut(s)	68
AoxI	GGCC	2 cut(s)	91, 734
ApeKI	GCWGC	4 cut(s)	29, 263, 334, 421
ApoI	RAATTY	2 cut(s)	352, 526
AspLEI	GCGC	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	4 cut(s)	16, 275, 321, 433
BciT130I	CCWGG	1 cut(s)	738
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	2 cut(s)	78, 781
BfmI	CTRYAG	2 cut(s)	87, 703
BisI	GCNGC	5 cut(s)	30, 264, 335, 422, 480
BlsI	GCNGC	5 cut(s)	31, 265, 336, 423, 481
Bme1390I	CCNGG	1 cut(s)	738
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	738
BpiI	GAAGAC	1 cut(s)	624
BpmI	CTGGAG	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	645
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bse1I	ACTGG	2 cut(s)	520, 777
BseBI	CCWGG	1 cut(s)	738
BseDI	CCNNGG	1 cut(s)	645
BseMII	CTCAG	3 cut(s)	81, 449, 671
BseNI	ACTGG	2 cut(s)	520, 777
BseXI	GCAGC	4 cut(s)	16, 275, 321, 433
BsgI	GTGCAG	2 cut(s)	15, 578
BshFI	GGCC	2 cut(s)	93, 736
BshNI	GGYRCC	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	93, 736
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	43
Bsp19I	CCATGG	1 cut(s)	645
BspACI	CCGC	1 cut(s)	479
BspANI	GGCC	2 cut(s)	93, 736
BspCNI	CTCAG	3 cut(s)	80, 450, 672
BspLI	GGNNCC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	520, 777
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	645
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	2 cut(s)	590, 707
BstC8I	GCNNGC	2 cut(s)	21, 332
BstDEI	CTNAG	7 cut(s)	67, 294, 458, 471, 501, 680, 726
BstDSI	CCRYGG	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 336, 476
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	736
BstSFI	CTRYAG	2 cut(s)	87, 703
BstV1I	GCAGC	4 cut(s)	16, 275, 321, 433
BstV2I	GAAGAC	1 cut(s)	624
BsuRI	GGCC	2 cut(s)	93, 736
BtgI	CCRYGG	1 cut(s)	645
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	2 cut(s)	566, 770
Cac8I	GCNNGC	2 cut(s)	21, 332
CfoI	GCGC	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	166, 564
CviAII	CATG	2 cut(s)	243, 646
CviQI	GTAC	2 cut(s)	166, 564
DdeI	CTNAG	7 cut(s)	67, 294, 458, 471, 501, 680, 726
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DrdI	GACNNNNNNGTC	1 cut(s)	663
DseDI	GACNNNNNNGTC	1 cut(s)	663
Eco130I	CCWWGG	1 cut(s)	645
Eco32I	GATATC	1 cut(s)	778
Eco57I	CTGAAG	2 cut(s)	587, 600
EcoRII	CCWGG	1 cut(s)	736
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	645
FaeI	CATG	2 cut(s)	246, 649
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	2 cut(s)	242, 645
Fnu4HI	GCNGC	5 cut(s)	30, 264, 335, 422, 480
Fsp4HI	GCNGC	5 cut(s)	30, 264, 335, 422, 480
FspBI	CTAG	2 cut(s)	78, 781
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	5 cut(s)	30, 264, 335, 422, 480
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	93, 736
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	246, 649
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	720
HinfI	GANTC	3 cut(s)	4, 448, 491
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	3 cut(s)	202, 464, 564
Hpy188I	TCNGA	5 cut(s)	379, 418, 580, 606, 681
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	3 cut(s)	202, 464, 564
HpyAV	CCTTC	3 cut(s)	150, 575, 611
HpyCH4III	ACNGT	2 cut(s)	590, 707
HpyCH4IV	ACGT	3 cut(s)	101, 387, 621
HpyCH4V	TGCA	4 cut(s)	32, 255, 559, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 336, 476
HpyF3I	CTNAG	7 cut(s)	67, 294, 458, 471, 501, 680, 726
HpySE526I	ACGT	3 cut(s)	101, 387, 621
Hsp92II	CATG	2 cut(s)	246, 649
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	9 cut(s)	75, 204, 344, 438, 501, 723, 750, 758, 773
Lsp1109I	GCAGC	4 cut(s)	16, 275, 321, 433
MaeI	CTAG	2 cut(s)	78, 781
MaeII	ACGT	3 cut(s)	101, 387, 621
MaeIII	GTNAC	5 cut(s)	73, 80, 245, 584, 590
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	4 cut(s)	383, 486, 629, 631
MfeI	CAATTG	2 cut(s)	177, 309
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	6 cut(s)	130, 177, 276, 309, 352, 526
MmeI	TCCRAC	2 cut(s)	168, 737
MnlI	CCTC	4 cut(s)	60, 230, 253, 675
MseI	TTAA	3 cut(s)	368, 435, 626
MspA1I	CMGCKG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	738
MunI	CAATTG	2 cut(s)	177, 309
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	3 cut(s)	29, 336, 476
NcoI	CCATGG	1 cut(s)	645
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	246, 649
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	3 cut(s)	245, 584, 590
NspI	RCATGY	1 cut(s)	246
PciI	ACATGT	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	448, 491
PkrI	GCNGC	5 cut(s)	31, 265, 336, 423, 481
PscI	ACATGT	1 cut(s)	242
PsiI	TTATAA	2 cut(s)	57, 486
Psp1406I	AACGTT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	1 cut(s)	329
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	167, 565
RsaNI	GTAC	2 cut(s)	166, 564
SaqAI	TTAA	3 cut(s)	368, 435, 626
SatI	GCNGC	5 cut(s)	30, 264, 335, 422, 480
Sau3AI	GATC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	1 cut(s)	68
SfcI	CTRYAG	2 cut(s)	87, 703
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SpeI	ACTAGT	1 cut(s)	77
Sse9I	AATT	6 cut(s)	130, 177, 276, 309, 352, 526
SsiI	CCGC	1 cut(s)	479
SspI	AATATT	2 cut(s)	412, 635
SspMI	CTAG	2 cut(s)	78, 781
StyD4I	CCNGG	1 cut(s)	736
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	590, 707
TaiI	ACGT	3 cut(s)	104, 390, 624
TaqI	TCGA	1 cut(s)	222
TasI	AATT	6 cut(s)	130, 177, 276, 309, 352, 526
TatI	WGTACW	1 cut(s)	563
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	448, 491
Tru1I	TTAA	3 cut(s)	368, 435, 626
Tru9I	TTAA	3 cut(s)	368, 435, 626
TscAI	CASTG	2 cut(s)	566, 777
TseFI	GTSAC	3 cut(s)	245, 584, 590
TseI	GCWGC	4 cut(s)	29, 263, 334, 421
Tsp45I	GTSAC	3 cut(s)	245, 584, 590
TspDTI	ATGAA	2 cut(s)	296, 552
TspRI	CASTG	2 cut(s)	566, 777
XapI	RAATTY	2 cut(s)	352, 526
XceI	RCATGY	1 cut(s)	246
XspI	CTAG	2 cut(s)	78, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.