Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8309209.1

Orthogroup ID

OG0000635

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 712

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8309209.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 668 bp

atcttcttttcaaagattgtccatccacaaactatactgccaagagttcatttgaaaataatctcaagctactcctcgactcattgtcttccaatacttcaatctatggtggtttctacaatgacacgattggcaatagcagtgaccacgtctatggacaagcactttgtagaggggatgtaaactccacagtttgtcagagctgtgttcatgatgcaagccaggaaatcaagagttgtaaaactcaagaagcaatcatatggtatgatctatgtcaagttcactattcctctgccccgttcttttcaatgatgttatatggtgggaagcttcctgagaagaataagcaggagaagaatgtaacaaatcccaagcagttatttgatgttttgaataatttaatgacaaagctcttggaccagactgcctatacttctaaggatatgtttgcaaccggctatatgaaattttcaggaaagcgatctatttatggcctacaacagtgcactagagacatttctgaagatgaatgccataactgtttgaattctgctcgtgaggagcttcaggtatgctgctctgctcgcgaaggtggaactgttgttagtaggaattgtaatgtgaggtttgagctctaccaatttttcaacgacatttccaaaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase_Tyr Stress-antifung

Protein Analysis

221

Amino Acids

24.9

Weight (kDa)

6.11

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica	MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica	Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis	pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis	RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata	RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora	Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa	Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha	Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana	Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	587
AcsI	RAATTY	2 cut(s)	466, 546
AcuI	CTGAAG	2 cut(s)	542, 550
AgsI	TTSAA	7 cut(s)	12, 55, 101, 308, 393, 546, 648
AhdI	GACNNNNNGTC	1 cut(s)	84
AjiI	CACGTC	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	6 cut(s)	69, 203, 330, 411, 564, 633
AluI	AGCT	6 cut(s)	69, 203, 330, 411, 564, 633
Alw21I	GWGCWC	2 cut(s)	508, 635
Alw26I	GTCTC	1 cut(s)	506
Alw44I	GTGCAC	1 cut(s)	504
AoxI	GGCC	1 cut(s)	492
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	2 cut(s)	466, 546
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspS9I	GGNCC	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	635
BauI	CACGAG	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	508, 635
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	509
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	417
BmeRI	GACNNNNNGTC	1 cut(s)	84
BmgBI	CACGTC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	80
BpuEI	CTTGAG	2 cut(s)	49, 230
Bse118I	RCCGGY	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	223
BseGI	GGATG	2 cut(s)	22, 183
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	64, 574
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	562
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	1 cut(s)	494
BsiHKAI	GWGCWC	2 cut(s)	508, 635
BsiSI	CCGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	494
Bsp1286I	GDGCHC	2 cut(s)	508, 635
Bsp143I	GATC	2 cut(s)	267, 481
Bsp68I	TCGCGA	1 cut(s)	587
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	587
BspHI	TCATGA	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	454
BssMI	GATC	2 cut(s)	267, 481
BssSI	CACGAG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	4 cut(s)	192, 503, 541, 600
BstC8I	GCNNGC	2 cut(s)	219, 585
BstDEI	CTNAG	2 cut(s)	335, 437
BstF5I	GGATG	2 cut(s)	22, 183
BstFNI	CGCG	1 cut(s)	587
BstKTI	GATC	2 cut(s)	270, 484
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	2 cut(s)	267, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	562
BstV2I	GAAGAC	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	494
BtrI	CACGTC	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	22, 183
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	147, 508
BtuMI	TCGCGA	1 cut(s)	587
Cac8I	GCNNGC	2 cut(s)	219, 585
CciI	TCATGA	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	417
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	9 cut(s)	69, 203, 221, 330, 411, 458, 494, 564, 633
CviKI_1	RGCY	9 cut(s)	69, 203, 221, 330, 411, 458, 494, 564, 633
DdeI	CTNAG	2 cut(s)	335, 437
DpnI	GATC	2 cut(s)	269, 483
DpnII	GATC	2 cut(s)	267, 481
DriI	GACNNNNNGTC	1 cut(s)	84
Eam1105I	GACNNNNNGTC	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	633
Eco57I	CTGAAG	2 cut(s)	542, 550
EcoICRI	GAGCTC	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	635
FaeI	CATG	1 cut(s)	214
FatI	CATG	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	2 cut(s)	9, 190
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	1 cut(s)	509
GluI	GCNGC	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	455
Hin1II	CATG	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	183, 282, 506
Hpy188I	TCNGA	2 cut(s)	200, 522
Hpy188III	TCNNGA	7 cut(s)	211, 231, 247, 334, 473, 556, 586
Hpy8I	GTNNAC	3 cut(s)	183, 282, 506
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	4 cut(s)	192, 503, 541, 600
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	3 cut(s)	217, 451, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	2 cut(s)	335, 437
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	267, 481
LmnI	GCTCC	1 cut(s)	561
LpnPI	CCDG	8 cut(s)	208, 235, 334, 347, 433, 458, 468, 553
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	142, 360
MalI	GATC	2 cut(s)	269, 483
MboI	GATC	2 cut(s)	267, 481
MboII	GAAGA	4 cut(s)	80, 351, 366, 535
MhlI	GDGCHC	2 cut(s)	508, 635
MluCI	AATT	5 cut(s)	396, 466, 546, 612, 640
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	5 cut(s)	85, 166, 300, 552, 617
MseI	TTAA	1 cut(s)	400
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	1 cut(s)	584
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	2 cut(s)	267, 481
NlaIII	CATG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	142
NruI	TCGCGA	1 cut(s)	587
PagI	TCATGA	1 cut(s)	210
PctI	GAATGC	1 cut(s)	535
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	577
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	635
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	417
PsyI	GACNNNGTC	1 cut(s)	148
RruI	TCGCGA	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	400
SatI	GCNGC	1 cut(s)	576
Sau3AI	GATC	2 cut(s)	267, 481
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	2 cut(s)	508, 635
SfaNI	GCATC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	64, 245
SmoI	CTYRAG	2 cut(s)	64, 245
Sse9I	AATT	5 cut(s)	396, 466, 546, 612, 640
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	635
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	4 cut(s)	192, 503, 541, 600
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	77
TasI	AATT	5 cut(s)	396, 466, 546, 612, 640
Tru1I	TTAA	1 cut(s)	400
Tru9I	TTAA	1 cut(s)	400
TscAI	CASTG	2 cut(s)	147, 508
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	4 cut(s)	38, 199, 478, 542
TspRI	CASTG	2 cut(s)	147, 508
Tth111I	GACNNNGTC	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	417
XapI	RAATTY	2 cut(s)	466, 546
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.