Rh5CG040400

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
2655818 .. 2658180
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG040400.1

Sequence Viewer

Length: 825 bp
ATGATGGTTGTTCATTGTTCAAGAACTGAAAACCAAAATATGTTTCGTTTTCCAGTACTGTTTTTGCTTTGTTCTGTCATCATCTCTCTCTTTTGTGATCATGCTTATGCTGATCCTCCATATAAGCTATGCTCAAACACTTCCTACTATTCAGATAATAGTACGTTTCAGACAAACCTCAACACTCTGCTCAATTCATTACCTTCCAATGCTTCTGTTTCCAAGTTGTACAATACATCCTTTGGAAATGAGCCAGATAAAGTCTTTGCTCTCTACATGTGCCTCGACTATCTCGATCCTGGTTCCTGTCATGATTGCATAAACATGGCGCAACAAGACATTGCAAACATATGTCCTTACTCCAAAGAAGCGGTTGTATGGGAGGAGAACTGTCAACTGCGCTACTCCAATCAGAATTTCTTAGGCAGGTTGAATGTAGATGACAACATCCCCTTAGATAACAAGAAGAATATTTCAGTTCCTGAAAAATTCGAGACAGTTGTGAACAAGACGCTGAGTAACCTCGCTGAGCAGGCGGCTTTTAATCATTCACTGAACATGTATGCCACTGGTGAAGTACCCTTTCAAGATAAAATGGTATATGCTCTTGTGCAGTGCACTACAGACTTATCTGGGAATGATTGTGATACATGCCTTATGAGAGCCATAGAAGATGTTTTAAGAGCGTCCTATTCCTCTCTTGGTGCGAGACTTCTCAGTCGTAGTTGTTATCTGAGGTATGAGTTTTATTCCTTCTATAATGGGGCAACGTCTGAAGCTCCTGTTGCTAATAACAAAGGAGGAGGCATGGAAATTATGGGATGA

Protein Analysis

274

Amino Acids

30.8

Weight (kDa)

4.82

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 44 - 138 2.9e-22 Salt stress response/antifungal
Stress-antifung PF01657 156 - 249 5.3e-14 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 717
Acc36I ACCTGC 1 cut(s) 417
AciI CCGC 2 cut(s) 371, 536
AclWI GGATC 2 cut(s) 107, 290
AcsI RAATTY 2 cut(s) 415, 488
AcuI CTGAAG 1 cut(s) 795
AfaI GTAC 4 cut(s) 57, 163, 230, 579
AflIII ACRYGT 2 cut(s) 276, 558
AgsI TTSAA 3 cut(s) 21, 433, 587
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 4 cut(s) 27, 59, 401, 433
AluBI AGCT 2 cut(s) 127, 779
AluI AGCT 2 cut(s) 127, 779
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 2 cut(s) 488, 703
Alw44I GTGCAC 1 cut(s) 616
AlwI GGATC 2 cut(s) 107, 290
AlwNI CAGNNNCTG 1 cut(s) 482
ApaLI GTGCAC 1 cut(s) 616
ApoI RAATTY 2 cut(s) 415, 488
AspLEI GCGC 2 cut(s) 331, 402
AsuHPI GGTGA 1 cut(s) 584
BaeGI GKGCMC 1 cut(s) 620
Bbv12I GWGCWC 1 cut(s) 620
BciT130I CCWGG 1 cut(s) 300
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 488, 703
BfmI CTRYAG 1 cut(s) 621
BfuAI ACCTGC 1 cut(s) 417
BisI GCNGC 1 cut(s) 537
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 538
BmcAI AGTACT 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 300
Bpu1102I GCTNAGC 1 cut(s) 528
Bse1I ACTGG 2 cut(s) 53, 574
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 236, 447
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 4 cut(s) 506, 519, 725, 730
BseNI ACTGG 2 cut(s) 53, 574
BseRI GAGGAG 2 cut(s) 398, 816
BseSI GKGCMC 1 cut(s) 620
BsgI GTGCAG 1 cut(s) 632
BsiHKAI GWGCWC 1 cut(s) 620
BsmAI GTCTC 2 cut(s) 488, 703
Bsp1286I GDGCHC 1 cut(s) 620
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 3 cut(s) 97, 112, 295
Bsp1720I GCTNAGC 1 cut(s) 528
BspACI CCGC 2 cut(s) 371, 536
BspCNI CTCAG 4 cut(s) 507, 520, 726, 729
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 107, 290
BsrDI GCAATG 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 2 cut(s) 53, 574
BssMI GATC 3 cut(s) 97, 112, 295
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 3 cut(s) 60, 392, 499
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 6 cut(s) 421, 454, 515, 528, 716, 734
BstF5I GGATG 2 cut(s) 236, 447
BstHHI GCGC 2 cut(s) 331, 402
BstKTI GATC 3 cut(s) 100, 115, 298
BstMAI GTCTC 2 cut(s) 488, 703
BstMBI GATC 3 cut(s) 97, 112, 295
BstMWI GCNNNNNNNGC 2 cut(s) 533, 785
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 3 cut(s) 280, 562, 654
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 621
BstSLI GKGCMC 1 cut(s) 620
BtsCI GGATG 2 cut(s) 236, 447
BtsI GCAGTG 1 cut(s) 620
BtsIMutI CAGTG 3 cut(s) 551, 567, 620
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 534
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 1 cut(s) 310
CfoI GCGC 2 cut(s) 331, 402
CseI GACGC 2 cut(s) 520, 675
Csp6I GTAC 4 cut(s) 56, 162, 229, 578
CviAII CATG 7 cut(s) 101, 277, 311, 325, 559, 651, 808
CviJI RGCY 5 cut(s) 127, 253, 539, 665, 779
CviKI_1 RGCY 5 cut(s) 127, 253, 539, 665, 779
CviQI GTAC 4 cut(s) 56, 162, 229, 578
DdeI CTNAG 6 cut(s) 421, 454, 515, 528, 716, 734
DpnI GATC 3 cut(s) 99, 114, 297
DpnII GATC 3 cut(s) 97, 112, 295
DrdI GACNNNNNNGTC 1 cut(s) 717
DseDI GACNNNNNNGTC 1 cut(s) 717
Eco57I CTGAAG 1 cut(s) 795
EcoRII CCWGG 1 cut(s) 298
FaeI CATG 7 cut(s) 104, 280, 314, 328, 562, 654, 811
FatI CATG 7 cut(s) 100, 276, 310, 324, 558, 650, 807
FauNDI CATATG 1 cut(s) 350
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 2 cut(s) 223, 434
Fsp4HI GCNGC 1 cut(s) 537
GlaI GCGC 2 cut(s) 330, 401
GluI GCNGC 1 cut(s) 537
HgaI GACGC 2 cut(s) 520, 675
HhaI GCGC 2 cut(s) 331, 402
Hin1II CATG 7 cut(s) 104, 280, 314, 328, 562, 654, 811
Hin6I GCGC 2 cut(s) 329, 400
HinP1I GCGC 2 cut(s) 329, 400
HincII GTYRAC 1 cut(s) 395
HindII GTYRAC 1 cut(s) 395
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 395, 505, 618
Hpy188I TCNGA 5 cut(s) 154, 171, 414, 735, 775
Hpy188III TCNNGA 6 cut(s) 21, 293, 311, 482, 493, 587
Hpy8I GTNNAC 3 cut(s) 395, 505, 618
HpyAV CCTTC 2 cut(s) 213, 763
HpyCH4III ACNGT 3 cut(s) 60, 392, 499
HpyCH4IV ACGT 2 cut(s) 164, 770
HpyCH4V TGCA 4 cut(s) 318, 344, 613, 618
HpyF10VI GCNNNNNNNGC 2 cut(s) 533, 785
HpyF3I CTNAG 6 cut(s) 421, 454, 515, 528, 716, 734
HpySE526I ACGT 2 cut(s) 164, 770
Hsp92II CATG 7 cut(s) 104, 280, 314, 328, 562, 654, 811
HspAI GCGC 2 cut(s) 329, 400
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 97, 112, 295
LmnI GCTCC 1 cut(s) 784
MaeII ACGT 2 cut(s) 164, 770
MaeIII GTNAC 1 cut(s) 518
MalI GATC 3 cut(s) 99, 114, 297
MboI GATC 3 cut(s) 97, 112, 295
MboII GAAGA 2 cut(s) 478, 683
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 4 cut(s) 193, 415, 488, 813
MnlI CCTC 9 cut(s) 126, 188, 293, 376, 533, 706, 729, 794, 797
MseI TTAA 2 cut(s) 543, 680
MslI CAYNNNNRTG 2 cut(s) 105, 323
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 533, 785
NdeI CATATG 1 cut(s) 350
NdeII GATC 3 cut(s) 97, 112, 295
NlaIII CATG 7 cut(s) 104, 280, 314, 328, 562, 654, 811
NlaIV GGNNCC 1 cut(s) 304
NspI RCATGY 3 cut(s) 280, 562, 654
PagI TCATGA 1 cut(s) 310
PciI ACATGT 2 cut(s) 276, 558
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PkrI GCNGC 1 cut(s) 538
PscI ACATGT 2 cut(s) 276, 558
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 482
RsaI GTAC 4 cut(s) 57, 163, 230, 579
RsaNI GTAC 4 cut(s) 56, 162, 229, 578
RseI CAYNNNNRTG 2 cut(s) 105, 323
SaqAI TTAA 2 cut(s) 543, 680
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 3 cut(s) 97, 112, 295
ScaI AGTACT 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 1 cut(s) 620
SetI ASST 9 cut(s) 129, 167, 180, 205, 431, 525, 740, 773, 781
SfcI CTRYAG 1 cut(s) 621
SmiMI CAYNNNNRTG 2 cut(s) 105, 323
Sse9I AATT 4 cut(s) 193, 415, 488, 813
SsiI CCGC 2 cut(s) 371, 536
SspI AATATT 1 cut(s) 472
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 3 cut(s) 60, 392, 499
TaiI ACGT 2 cut(s) 167, 773
TaqI TCGA 3 cut(s) 285, 294, 492
TasI AATT 4 cut(s) 193, 415, 488, 813
TatI WGTACW 2 cut(s) 55, 228
TauI GCSGC 1 cut(s) 539
Tru1I TTAA 2 cut(s) 543, 680
Tru9I TTAA 2 cut(s) 543, 680
TscAI CASTG 3 cut(s) 558, 574, 620
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 3 cut(s) 558, 574, 620
VneI GTGCAC 1 cut(s) 616
XapI RAATTY 2 cut(s) 415, 488
XceI RCATGY 3 cut(s) 280, 562, 654
ZrmI AGTACT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.