Rh5CG040500

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
2659694 .. 2662320
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG040500.1

Sequence Viewer

Length: 1386 bp
ATGGACGCCCTTTCAGTTATGCTTTTCATGATTCTACCACTTTTGTTACCAGCTAGCGTTTCTGGTGCAGATCCTCTTGACACTTTTTGCTCACCTGATGCCAGTATCTACACTCATAGCAGCCAATTTGAAAGTAATCTCAAGCAGCTCCTTGAGTCATTGTCATTCAACACTTCCATCTCCGGTGGTTTCTACAATGACACAATCGGCACTGGCCGTGACAGAGTATATGGACAAACACTTTGTAGAGGGGATGTGAACTCCACGGTTTGTCAGAAATGTGTAAGTGATGCAAGCCGGGAAATCTTCAACAATTGTAACTCTACAGATGCATTGATCTGGTATGAACTATGTCAAGTTCGCTATTCCTACCAGATGTTCTTTTCGTCGATGTCTTATACTGGGAAGTACCCGGCCCAGAATGATCAGGAGGAGAGTGTATCAGATTCAAATTATTTTGGTGATGTTTTAATGTATTTAATGAATAACCTCTCCGGAGAGTCTCTGTTTACTCCTCCAAAGAAAATGTTTGCAACTGGTGAAATTGAGCTTTCGGGAAATAGAATTATTTATGGTCTGGAACAGTGCACCAGAGACATCTCTGAAAGTGACTGCAAACACTGTCTGGTTTATGCTTTAGGGGATCTTTCATCATGCTGCTCCTCTCGTAAAGGTGGAACTGTAGTCAGTAGAAATTGTAATGTGAGGTTTGAGATCTCCCGGTTTTTTAATGACACTTCAAGCAGTCGGTTAATTTATCCATATTCAAAAGGGGATGACAGGAAGACTTGGAAGGTGGTGGTTACATGTGCATCCGCTATACTATTTGCAGTTCTAGCTGTACTTTGTGCAGTTCATTTTCGACGGCAAAAGAGATTGAAAAATGTCAACGATGAAGAGATCAGAAGCGAGCATGTACTATTACATGATCTGGCAAGTCCCACTGAAGTAACAATTACAGAAGAAGGCGTATTGGTGACTTCTGAGGAACTGCCATTCGTTGATGTAGCAACTATAAAAATAGCTACAGATGACTTTTCAGATTCCAACAAGCTTGGACAAGGTGGGTTTGGTACTGTTTACAAGGCATGGAACCTATGGAAGGATGGAAAAGAAGTTGAATTTGTAGATCCTTGCTTGATGGAATCATCCGCGACAAAAGAGATTTTGAGATGCATGCATATCGGGCTTTTGTGTGTCCAGGAAGACCCTGAAGAAAGACCAACAATGTCAAATGTGGTTGTGTTGCTGGAAAGTGATTCAATTGAACTTGCTGAGCCAAAGAAACCAGCAATTTTTGCAGCAAGTAGAATTGCTCCGATTGACGAGTCTACTTCTAGTCCTACTCCGAATGGCCTCACTCTTTCCATCATTTTGCCAAGGTGA

Protein Analysis

461

Amino Acids

51.14

Weight (kDa)

4.83

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 30 - 123 6.7e-22 Salt stress response/antifungal
Stress-antifung PF01657 145 - 238 8.2e-12 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1331
AccII CGCG 1 cut(s) 1154
AccIII TCCGGA 1 cut(s) 494
AciI CCGC 2 cut(s) 816, 1152
AclWI GGATC 3 cut(s) 65, 651, 1124
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 1121
AcuI CTGAAG 2 cut(s) 966, 1233
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 4 cut(s) 410, 843, 918, 1075
AfiI CCNNNNNNNGG 1 cut(s) 1102
AflIII ACRYGT 1 cut(s) 806
AjnI CCWGG 1 cut(s) 1200
AluBI AGCT 6 cut(s) 53, 148, 550, 839, 1025, 1054
AluI AGCT 6 cut(s) 53, 148, 550, 839, 1025, 1054
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 2 cut(s) 507, 588
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 3 cut(s) 65, 651, 1124
Aor13HI TCCGGA 1 cut(s) 494
AoxI GGCC 3 cut(s) 214, 414, 1354
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 4 cut(s) 120, 145, 657, 1301
ApoI RAATTY 1 cut(s) 1121
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AspS9I GGNCC 1 cut(s) 415
AsuC2I CCSGG 3 cut(s) 299, 413, 721
AsuHPI GGTGA 4 cut(s) 84, 473, 551, 988
AsuNHI GCTAGC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 590
BbsI GAAGAC 2 cut(s) 791, 1212
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 4 cut(s) 132, 157, 644, 1313
BccI CCATC 4 cut(s) 185, 1100, 1135, 1376
BceAI ACGGC 2 cut(s) 201, 881
BcgI CGANNNNNNTGC 2 cut(s) 1165, 1199
BciT130I CCWGG 1 cut(s) 1202
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 3 cut(s) 299, 413, 721
BcoDI GTCTC 2 cut(s) 507, 588
BfaI CTAG 3 cut(s) 54, 836, 1338
BfmI CTRYAG 3 cut(s) 324, 681, 1026
BglII AGATCT 1 cut(s) 714
BisI GCNGC 4 cut(s) 121, 146, 658, 1302
BlpI GCTNAGC 1 cut(s) 1275
BlsI GCNGC 4 cut(s) 122, 147, 659, 1303
Bme1390I CCNGG 4 cut(s) 299, 413, 721, 1202
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 1094
BmrFI CCNGG 4 cut(s) 299, 413, 721, 1202
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 5 cut(s) 88, 280, 319, 821, 1163
BmtI GCTAGC 1 cut(s) 57
BmuI ACTGGG 1 cut(s) 411
BpiI GAAGAC 2 cut(s) 791, 1212
Bpu1102I GCTNAGC 1 cut(s) 1275
BpuEI CTTGAG 2 cut(s) 125, 173
BpuMI CCSGG 3 cut(s) 299, 413, 721
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 264, 1379
BsaWI WCCGGW 2 cut(s) 182, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 1102
Bse1I ACTGG 4 cut(s) 102, 217, 406, 541
BseAI TCCGGA 1 cut(s) 494
BseBI CCWGG 1 cut(s) 1202
BseDI CCNNGG 2 cut(s) 264, 1379
BseGI GGATG 5 cut(s) 259, 781, 812, 1111, 1148
BseLI CCNNNNNNNGG 1 cut(s) 1102
BseMII CTCAG 2 cut(s) 975, 1266
BseNI ACTGG 4 cut(s) 102, 217, 406, 541
BseRI GAGGAG 3 cut(s) 446, 504, 652
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 4 cut(s) 132, 157, 644, 1313
BsgI GTGCAG 2 cut(s) 87, 870
Bsh1236I CGCG 1 cut(s) 1154
BshFI GGCC 3 cut(s) 216, 416, 1356
BsiHKAI GWGCWC 1 cut(s) 590
BsiSI CCGG 5 cut(s) 183, 298, 413, 495, 721
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 1 cut(s) 1102
BsmAI GTCTC 2 cut(s) 507, 588
BsmFI GGGAC 1 cut(s) 924
BsnI GGCC 3 cut(s) 216, 416, 1356
Bsp1286I GDGCHC 1 cut(s) 590
Bsp13I TCCGGA 1 cut(s) 494
Bsp143I GATC 8 cut(s) 70, 336, 424, 643, 714, 900, 928, 1129
Bsp1720I GCTNAGC 1 cut(s) 1275
BspACI CCGC 2 cut(s) 816, 1152
BspANI GGCC 3 cut(s) 216, 416, 1356
BspCNI CTCAG 2 cut(s) 976, 1267
BspEI TCCGGA 1 cut(s) 494
BspFNI CGCG 1 cut(s) 1154
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 1094
BspOI GCTAGC 1 cut(s) 57
BspPI GGATC 3 cut(s) 65, 651, 1124
BsrI ACTGG 4 cut(s) 102, 217, 406, 541
BssECI CCNNGG 2 cut(s) 264, 1379
BssMI GATC 8 cut(s) 70, 336, 424, 643, 714, 900, 928, 1129
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 1379
Bst2UI CCWGG 1 cut(s) 1202
Bst4CI ACNGT 5 cut(s) 268, 585, 623, 682, 1078
Bst6I CTCTTC 1 cut(s) 891
BstACI GRCGYC 1 cut(s) 6
BstAPI GCANNNNNTGC 1 cut(s) 1298
BstC8I GCNNGC 4 cut(s) 55, 295, 911, 1178
BstDEI CTNAG 2 cut(s) 984, 1275
BstDSI CCRYGG 1 cut(s) 264
BstENI CCTNNNNNAGG 1 cut(s) 1100
BstF5I GGATG 5 cut(s) 259, 781, 812, 1111, 1148
BstFNI CGCG 1 cut(s) 1154
BstKTI GATC 8 cut(s) 73, 339, 427, 646, 717, 903, 931, 1132
BstMAI GTCTC 2 cut(s) 507, 588
BstMBI GATC 8 cut(s) 70, 336, 424, 643, 714, 900, 928, 1129
BstMWI GCNNNNNNNGC 3 cut(s) 836, 1186, 1298
BstNI CCWGG 1 cut(s) 1202
BstNSI RCATGY 3 cut(s) 810, 917, 1180
BstSCI CCNGG 4 cut(s) 297, 411, 719, 1200
BstSFI CTRYAG 3 cut(s) 324, 681, 1026
BstSLI GKGCMC 1 cut(s) 590
BstUI CGCG 1 cut(s) 1154
BstV1I GCAGC 4 cut(s) 132, 157, 644, 1313
BstV2I GAAGAC 2 cut(s) 791, 1212
BstX2I RGATCY 4 cut(s) 70, 643, 714, 1129
BstYI RGATCY 4 cut(s) 70, 643, 714, 1129
BsuRI GGCC 3 cut(s) 216, 416, 1356
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 5 cut(s) 259, 781, 812, 1111, 1148
BtsIMutI CAGTG 4 cut(s) 210, 590, 619, 942
Cac8I GCNNGC 4 cut(s) 55, 295, 911, 1178
CciI TCATGA 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 415
CseI GACGC 1 cut(s) 14
Csp6I GTAC 4 cut(s) 409, 842, 917, 1074
CviAII CATG 7 cut(s) 28, 654, 807, 914, 926, 1089, 1177
CviQI GTAC 4 cut(s) 409, 842, 917, 1074
DdeI CTNAG 2 cut(s) 984, 1275
DpnI GATC 8 cut(s) 72, 338, 426, 645, 716, 902, 930, 1131
DpnII GATC 8 cut(s) 70, 336, 424, 643, 714, 900, 928, 1129
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Eco130I CCWWGG 1 cut(s) 1379
Eco57I CTGAAG 2 cut(s) 966, 1233
EcoNI CCTNNNNNAGG 1 cut(s) 1100
EcoRII CCWGG 1 cut(s) 1200
EcoT14I CCWWGG 1 cut(s) 1379
EcoT22I ATGCAT 3 cut(s) 334, 1178, 1182
ErhI CCWWGG 1 cut(s) 1379
FaeI CATG 7 cut(s) 31, 657, 810, 917, 929, 1092, 1180
FaqI GGGAC 1 cut(s) 924
FatI CATG 7 cut(s) 27, 653, 806, 913, 925, 1088, 1176
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 1 cut(s) 1331
Fnu4HI GCNGC 4 cut(s) 121, 146, 658, 1302
FokI GGATG 5 cut(s) 266, 788, 799, 1118, 1135
Fsp4HI GCNGC 4 cut(s) 121, 146, 658, 1302
FspBI CTAG 3 cut(s) 54, 836, 1338
GluI GCNGC 4 cut(s) 121, 146, 658, 1302
HaeIII GGCC 3 cut(s) 216, 416, 1356
HapII CCGG 5 cut(s) 183, 298, 413, 495, 721
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 7 cut(s) 31, 657, 810, 917, 929, 1092, 1180
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HindIII AAGCTT 1 cut(s) 1052
HinfI GANTC 8 cut(s) 31, 155, 446, 500, 1043, 1145, 1259, 1328
HpaII CCGG 5 cut(s) 183, 298, 413, 495, 721
HphI GGTGA 4 cut(s) 84, 473, 551, 988
Hpy166II GTNNAC 6 cut(s) 259, 510, 588, 889, 1081, 1332
Hpy188I TCNGA 8 cut(s) 276, 445, 604, 905, 985, 1042, 1320, 1350
Hpy188III TCNNGA 6 cut(s) 28, 77, 428, 495, 555, 578
Hpy8I GTNNAC 6 cut(s) 259, 510, 588, 889, 1081, 1332
Hpy99I CGWCG 2 cut(s) 391, 867
HpyAV CCTTC 3 cut(s) 787, 959, 1096
HpyCH4III ACNGT 5 cut(s) 268, 585, 623, 682, 1078
HpyF10VI GCNNNNNNNGC 3 cut(s) 836, 1186, 1298
HpyF3I CTNAG 2 cut(s) 984, 1275
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 7 cut(s) 31, 657, 810, 917, 929, 1092, 1180
Kpn2I TCCGGA 1 cut(s) 494
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 8 cut(s) 70, 336, 424, 643, 714, 900, 928, 1129
LmnI GCTCC 3 cut(s) 153, 665, 1321
Lsp1109I GCAGC 4 cut(s) 132, 157, 644, 1313
LweI GCATC 5 cut(s) 88, 280, 319, 821, 1163
MaeI CTAG 3 cut(s) 54, 836, 1338
MaeIII GTNAC 7 cut(s) 45, 218, 317, 608, 802, 949, 976
MalI GATC 8 cut(s) 72, 338, 426, 645, 716, 902, 930, 1131
MboI GATC 8 cut(s) 70, 336, 424, 643, 714, 900, 928, 1129
MboII GAAGA 6 cut(s) 298, 796, 908, 974, 1217, 1226
MfeI CAATTG 2 cut(s) 313, 1263
MflI RGATCY 4 cut(s) 70, 643, 714, 1129
MhlI GDGCHC 1 cut(s) 590
MlyI GAGTC 3 cut(s) 164, 509, 1337
MmeI TCCRAC 1 cut(s) 1071
MnlI CCTC 9 cut(s) 84, 242, 424, 500, 525, 673, 699, 979, 1367
Mph1103I ATGCAT 3 cut(s) 334, 1178, 1182
MroI TCCGGA 1 cut(s) 494
MseI TTAA 4 cut(s) 470, 479, 729, 752
MspI CCGG 5 cut(s) 183, 298, 413, 495, 721
MspR9I CCNGG 4 cut(s) 299, 413, 721, 1202
MunI CAATTG 2 cut(s) 313, 1263
MvaI CCWGG 1 cut(s) 1202
MvnI CGCG 1 cut(s) 1154
MwoI GCNNNNNNNGC 3 cut(s) 836, 1186, 1298
NciI CCSGG 3 cut(s) 299, 413, 721
NdeII GATC 8 cut(s) 70, 336, 424, 643, 714, 900, 928, 1129
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 7 cut(s) 31, 657, 810, 917, 929, 1092, 1180
NlaIV GGNNCC 1 cut(s) 1094
NmuCI GTSAC 3 cut(s) 218, 608, 976
NsiI ATGCAT 3 cut(s) 334, 1178, 1182
NspI RCATGY 3 cut(s) 810, 917, 1180
PaeI GCATGC 1 cut(s) 1180
PagI TCATGA 1 cut(s) 27
PciI ACATGT 1 cut(s) 806
PfeI GAWTC 5 cut(s) 31, 446, 1043, 1145, 1259
PfoI TCCNGGA 1 cut(s) 1200
PkrI GCNGC 4 cut(s) 122, 147, 659, 1303
PleI GAGTC 3 cut(s) 163, 508, 1336
PpsI GAGTC 3 cut(s) 163, 508, 1336
PscI ACATGT 1 cut(s) 806
Psp6I CCWGG 1 cut(s) 1200
PspGI CCWGG 1 cut(s) 1200
PspN4I GGNNCC 1 cut(s) 1094
PspPI GGNCC 1 cut(s) 415
PsuI RGATCY 4 cut(s) 70, 643, 714, 1129
RsaI GTAC 4 cut(s) 410, 843, 918, 1075
RsaNI GTAC 4 cut(s) 409, 842, 917, 1074
SaqAI TTAA 4 cut(s) 470, 479, 729, 752
SatI GCNGC 4 cut(s) 121, 146, 658, 1302
Sau3AI GATC 8 cut(s) 70, 336, 424, 643, 714, 900, 928, 1129
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 3 cut(s) 164, 509, 1337
ScrFI CCNGG 4 cut(s) 299, 413, 721, 1202
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 5 cut(s) 88, 280, 319, 821, 1163
SfcI CTRYAG 3 cut(s) 324, 681, 1026
SmlI CTYRAG 2 cut(s) 140, 152
SmoI CTYRAG 2 cut(s) 140, 152
SphI GCATGC 1 cut(s) 1180
SsiI CCGC 2 cut(s) 816, 1152
SspMI CTAG 3 cut(s) 54, 836, 1338
StyD4I CCNGG 4 cut(s) 297, 411, 719, 1200
StyI CCWWGG 1 cut(s) 1379
TaaI ACNGT 5 cut(s) 268, 585, 623, 682, 1078
TaqI TCGA 2 cut(s) 389, 862
TatI WGTACW 2 cut(s) 841, 916
TfiI GAWTC 5 cut(s) 31, 446, 1043, 1145, 1259
Tru1I TTAA 4 cut(s) 470, 479, 729, 752
Tru9I TTAA 4 cut(s) 470, 479, 729, 752
TscAI CASTG 4 cut(s) 217, 590, 626, 949
TseFI GTSAC 3 cut(s) 218, 608, 976
TseI GCWGC 4 cut(s) 120, 145, 657, 1301
Tsp45I GTSAC 3 cut(s) 218, 608, 976
TspDTI ATGAA 6 cut(s) 16, 360, 497, 639, 845, 909
TspRI CASTG 4 cut(s) 217, 590, 626, 949
VneI GTGCAC 1 cut(s) 586
XagI CCTNNNNNAGG 1 cut(s) 1100
XapI RAATTY 1 cut(s) 1121
XceI RCATGY 3 cut(s) 810, 917, 1180
XmiI GTMKAC 1 cut(s) 1331
XspI CTAG 3 cut(s) 54, 836, 1338
Zsp2I ATGCAT 3 cut(s) 334, 1178, 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.