Rh5DG036400

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
2548818 .. 2549615
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG036400.1

Sequence Viewer

Length: 798 bp
ATGTTTCGTTTTCCAGTACTGTTTTTGCTTTGTTCTGTCATCATCTCTCTCTTTTGTGATCATGCTTATGCTGATCCTCCATATAAGCTATGCTCAAACACTTCCTACTATTCAGATAATAGTACGTTTCAGACAAACCTCAACACTCTGCTCAATTCATTACCTTCCAATGCTTCTGTTTCCAAGTTGTATAATACATCCTTTGGAAATGAACCAGATAAAGTCTTCGCTCTCTACATGTGCCTCGACTATCTTGATTCCGGTTCCTGTCATGATTGCATAAACATGGCGCAACAAGACATTGCAAACATATGTCCTTACTCCAAAGAAGCGGTTGTATGGGAGGAGAACTGTCAACTGCGCTACTCCAATCAGAATTTCTTTGGCAGGTTGAATGTAGATGACAACATCCCCTTAGATAACAAGAAGAATATTTCAGTTCCTGAAAAATTCGAGACAGTTGTGAACAAGACGCTGAATAACCTCGCTGAGCAGGCGGCTTTTAATCATTCACTGAACATGTATGCCACTGGTGAGGTACCCTTTCAAGATAAAATGGTATATGCTCTTGTGCAGTGCACTACAGACTTATCTGGGAATGATTGTGATACATGCCTTAAGAGAGCCATAGAAGATGTTTTAAGAGCGTCCTATTCCTCCATTGGTGCGAGACTTCTCAGTCGTAGTTGTTATCTGAGGTATGAGTTTTATTCCTTCTATAATGGGGCAACGTCTGAAGCTCCTGTTGCTAATAACAAAGGAGGAGGTAAGTACTTGAAAACAGTGTCTCTATTTTGA

Protein Analysis

265

Amino Acids

29.83

Weight (kDa)

5.1

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 31 - 125 6.1e-22 Salt stress response/antifungal
Stress-antifung PF01657 143 - 236 2.3e-14 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 378
Acc65I GGTACC 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 538
AciI CCGC 2 cut(s) 332, 497
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 2 cut(s) 376, 449
AcuI CTGAAG 1 cut(s) 756
AfaI GTAC 4 cut(s) 18, 124, 540, 773
AflII CTTAAG 1 cut(s) 617
AflIII ACRYGT 2 cut(s) 237, 519
AgsI TTSAA 3 cut(s) 394, 548, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 2 cut(s) 88, 740
AluI AGCT 2 cut(s) 88, 740
Alw21I GWGCWC 1 cut(s) 581
Alw26I GTCTC 3 cut(s) 449, 664, 792
Alw44I GTGCAC 1 cut(s) 577
AlwI GGATC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 443
ApaLI GTGCAC 1 cut(s) 577
ApoI RAATTY 2 cut(s) 376, 449
Asp718I GGTACC 1 cut(s) 538
AspLEI GCGC 2 cut(s) 292, 363
AsuHPI GGTGA 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 581
BanI GGYRCC 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 581
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 3 cut(s) 449, 664, 792
BfmI CTRYAG 1 cut(s) 582
BfrI CTTAAG 1 cut(s) 617
BfuAI ACCTGC 1 cut(s) 378
BisI GCNGC 1 cut(s) 498
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 499
BmcAI AGTACT 2 cut(s) 18, 773
BmiI GGNNCC 2 cut(s) 265, 540
BpiI GAAGAC 1 cut(s) 217
Bpu1102I GCTNAGC 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 14, 535
Bse3DI GCAATG 1 cut(s) 300
BseGI GGATG 2 cut(s) 197, 408
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 3 cut(s) 480, 686, 691
BseNI ACTGG 2 cut(s) 14, 535
BseRI GAGGAG 2 cut(s) 359, 777
BseSI GKGCMC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 593
BshNI GGYRCC 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 581
BsiSI CCGG 1 cut(s) 261
BsmAI GTCTC 3 cut(s) 449, 664, 792
Bsp1286I GDGCHC 1 cut(s) 581
Bsp143I GATC 2 cut(s) 58, 73
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 2 cut(s) 332, 497
BspCNI CTCAG 3 cut(s) 481, 687, 690
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 265, 540
BspMI ACCTGC 1 cut(s) 378
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 538
BspTI CTTAAG 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 2 cut(s) 14, 535
BssMI GATC 2 cut(s) 58, 73
Bst4CI ACNGT 4 cut(s) 21, 353, 460, 784
BstAFI CTTAAG 1 cut(s) 617
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 4 cut(s) 415, 489, 677, 695
BstF5I GGATG 2 cut(s) 197, 408
BstHHI GCGC 2 cut(s) 292, 363
BstKTI GATC 2 cut(s) 61, 76
BstMAI GTCTC 3 cut(s) 449, 664, 792
BstMBI GATC 2 cut(s) 58, 73
BstMWI GCNNNNNNNGC 2 cut(s) 494, 746
BstNSI RCATGY 3 cut(s) 241, 523, 615
BstSFI CTRYAG 1 cut(s) 582
BstSLI GKGCMC 1 cut(s) 581
BstV2I GAAGAC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 197, 408
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 4 cut(s) 512, 528, 581, 789
BveI ACCTGC 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 495
CaiI CAGNNNCTG 1 cut(s) 443
CciI TCATGA 1 cut(s) 271
CfoI GCGC 2 cut(s) 292, 363
CseI GACGC 2 cut(s) 481, 636
Csp6I GTAC 4 cut(s) 17, 123, 539, 772
CviAII CATG 6 cut(s) 62, 238, 272, 286, 520, 612
CviJI RGCY 4 cut(s) 88, 500, 626, 740
CviKI_1 RGCY 4 cut(s) 88, 500, 626, 740
CviQI GTAC 4 cut(s) 17, 123, 539, 772
DdeI CTNAG 4 cut(s) 415, 489, 677, 695
DpnI GATC 2 cut(s) 60, 75
DpnII GATC 2 cut(s) 58, 73
DrdI GACNNNNNNGTC 1 cut(s) 678
DseDI GACNNNNNNGTC 1 cut(s) 678
Eco57I CTGAAG 1 cut(s) 756
FaeI CATG 6 cut(s) 65, 241, 275, 289, 523, 615
FatI CATG 6 cut(s) 61, 237, 271, 285, 519, 611
FauNDI CATATG 1 cut(s) 311
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 2 cut(s) 184, 395
Fsp4HI GCNGC 1 cut(s) 498
GlaI GCGC 2 cut(s) 291, 362
GluI GCNGC 1 cut(s) 498
HapII CCGG 1 cut(s) 261
HgaI GACGC 2 cut(s) 481, 636
HhaI GCGC 2 cut(s) 292, 363
Hin1II CATG 6 cut(s) 65, 241, 275, 289, 523, 615
Hin6I GCGC 2 cut(s) 290, 361
HinP1I GCGC 2 cut(s) 290, 361
HincII GTYRAC 1 cut(s) 356
HindII GTYRAC 1 cut(s) 356
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 261
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 3 cut(s) 356, 466, 579
Hpy188I TCNGA 5 cut(s) 115, 132, 375, 696, 736
Hpy188III TCNNGA 5 cut(s) 254, 272, 443, 454, 548
Hpy8I GTNNAC 3 cut(s) 356, 466, 579
HpyAV CCTTC 2 cut(s) 174, 724
HpyCH4III ACNGT 4 cut(s) 21, 353, 460, 784
HpyCH4IV ACGT 2 cut(s) 125, 731
HpyCH4V TGCA 4 cut(s) 279, 305, 574, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 746
HpyF3I CTNAG 4 cut(s) 415, 489, 677, 695
HpySE526I ACGT 2 cut(s) 125, 731
Hsp92II CATG 6 cut(s) 65, 241, 275, 289, 523, 615
HspAI GCGC 2 cut(s) 290, 361
KpnI GGTACC 1 cut(s) 542
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 73
LmnI GCTCC 1 cut(s) 745
MaeII ACGT 2 cut(s) 125, 731
MalI GATC 2 cut(s) 60, 75
MboI GATC 2 cut(s) 58, 73
MboII GAAGA 3 cut(s) 217, 439, 644
MhlI GDGCHC 1 cut(s) 581
MluCI AATT 3 cut(s) 154, 376, 449
MseI TTAA 3 cut(s) 504, 618, 641
MslI CAYNNNNRTG 2 cut(s) 66, 284
MspCI CTTAAG 1 cut(s) 617
MspI CCGG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 494, 746
NdeI CATATG 1 cut(s) 311
NdeII GATC 2 cut(s) 58, 73
NlaIII CATG 6 cut(s) 65, 241, 275, 289, 523, 615
NlaIV GGNNCC 2 cut(s) 265, 540
NspI RCATGY 3 cut(s) 241, 523, 615
PagI TCATGA 1 cut(s) 271
PciI ACATGT 2 cut(s) 237, 519
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 499
PscI ACATGT 2 cut(s) 237, 519
PspN4I GGNNCC 2 cut(s) 265, 540
PstNI CAGNNNCTG 1 cut(s) 443
RsaI GTAC 4 cut(s) 18, 124, 540, 773
RsaNI GTAC 4 cut(s) 17, 123, 539, 772
RseI CAYNNNNRTG 2 cut(s) 66, 284
SaqAI TTAA 3 cut(s) 504, 618, 641
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 2 cut(s) 58, 73
ScaI AGTACT 2 cut(s) 18, 773
SduI GDGCHC 1 cut(s) 581
SfcI CTRYAG 1 cut(s) 582
SmiMI CAYNNNNRTG 2 cut(s) 66, 284
SmlI CTYRAG 1 cut(s) 617
SmoI CTYRAG 1 cut(s) 617
Sse9I AATT 3 cut(s) 154, 376, 449
SsiI CCGC 2 cut(s) 332, 497
SspI AATATT 1 cut(s) 433
TaaI ACNGT 4 cut(s) 21, 353, 460, 784
TaiI ACGT 2 cut(s) 128, 734
TaqI TCGA 2 cut(s) 246, 453
TasI AATT 3 cut(s) 154, 376, 449
TatI WGTACW 2 cut(s) 16, 771
TauI GCSGC 1 cut(s) 500
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 3 cut(s) 504, 618, 641
Tru9I TTAA 3 cut(s) 504, 618, 641
TscAI CASTG 4 cut(s) 519, 535, 581, 789
TspDTI ATGAA 2 cut(s) 147, 225
TspRI CASTG 4 cut(s) 519, 535, 581, 789
Vha464I CTTAAG 1 cut(s) 617
VneI GTGCAC 1 cut(s) 577
XapI RAATTY 2 cut(s) 376, 449
XceI RCATGY 3 cut(s) 241, 523, 615
ZrmI AGTACT 2 cut(s) 18, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.