MD10G1313400.v1.1

Salt stress response/antifungal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000635
Physical Location & Seq
Reverse (-)
39795861 .. 39797611
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1313400.v1.1.491

Sequence Viewer

Length: 1122 bp
ATGGGTTCCTGTGTCTATCTTGCAATGAGAAAAAGAAACAAAAAGGTGAGTAGTGAGATTTTAAGACAACATGTATTGTTCCCGGAACAACGTTTTCAAGGCAGAAACCCGAAAGCTGAGGAGTACCCCTATATCAGTTTGGCATCTATACATGCAGCTACGGATAAATTCTCTGATTCAAATAAGCTTGGAGAAGGTGGTTTTGGGCCTGTTTACAAGGGTGTACTCAGTGACGGAAAAGAAGTGGCAATCAAGAGGCTTTCAAGCTGTTCTGAGCAAGGCACGGAGGAATTCACAAATGAAGTTCTGCTGATAATGAAACTTCAACATAAAAATCTTGTTCGGCTTTTGGGTTTTTGTGTTGAGGGAGAGGAAAAACTGCTTGTCTATGAATACCTGCCAAACAGCAGCCTAAATGTCTTCCTCTTTGATTCAGAGAAACGAGTGCAACTTGATTGGAGCAGACGTGTAAACATTATAAGTGGAATTGCACGGGGAATTCTTTATTTACACGAGGACTCTCGACTTCAAATCATCCATAGGGACCTGAAAGCTAGCAATGTTTTATTGGACAGTGACATGAACCCTAAGATCTCCGACTTTGGCATGGCAAGGATCTTTGCAGGAAGTGAAGGCCAAGCAAATACGACTACAATAGTTGGGACTTACGGATACATGGCTCCAGAATATGCAATGGAGGGAGTATATTCCGTCAAGTCTGATGTTTATGGTTTCGGAGTACTATTGCTTGAGATCATAACTGGGAGAAGGAACGCCAGCTTTCATCCAATAAAACGTGTTCCTAGCCTTGTAACATATGCATGGAAATTATGGCATGACGGAAAAGGGTTGGAGCTACTCGACCCACTACTACTCGATTCATGTGATCCAGATGAGTTTCTAAGATATCTCCATATCGGATTGTTGTGTGTCCAGGAAGATGCGTATGACAGGCCAACCATGTCTTCTGCTGTTGTAATGTTGAAAAGTGAAACTGTAACTCTTAGCCAACCCGAGAAACCTGCTTTCACCACGGGAAGATTCACTGATCATTATACTGAGACAGCCGCTGGTAATAGTTCTATTAATGGCCTAACAGTTTCTAACGTCATGCCGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

374

Amino Acids

41.83

Weight (kDa)

6.33

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 58 - 257 1.7e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 60 - 258 1.1e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 479
Acc36I ACCTGC 2 cut(s) 405, 1030
AccII CGCG 1 cut(s) 1117
AciI CCGC 2 cut(s) 1068, 1115
AclI AACGTT 1 cut(s) 91
AclWI GGATC 2 cut(s) 623, 881
AcsI RAATTY 3 cut(s) 167, 290, 498
AfaI GTAC 3 cut(s) 125, 225, 741
AflIII ACRYGT 3 cut(s) 70, 466, 796
AgsI TTSAA 6 cut(s) 98, 180, 264, 326, 530, 985
AjiI CACGTC 1 cut(s) 467
AjnI CCWGG 1 cut(s) 933
AjuI GAANNNNNNNTTGG 4 cut(s) 186, 218, 949, 981
AluBI AGCT 7 cut(s) 116, 158, 187, 267, 554, 780, 856
AluI AGCT 7 cut(s) 116, 158, 187, 267, 554, 780, 856
Alw26I GTCTC 1 cut(s) 1055
AlwI GGATC 2 cut(s) 623, 881
AlwNI CAGNNNCTG 1 cut(s) 1070
Ama87I CYCGRG 1 cut(s) 1013
AoxI GGCC 4 cut(s) 206, 634, 953, 1090
ApeKI GCWGC 2 cut(s) 155, 408
ApoI RAATTY 3 cut(s) 167, 290, 498
AseI ATTAAT 1 cut(s) 1086
AspS9I GGNCC 2 cut(s) 206, 544
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 58, 1021
AsuNHI GCTAGC 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 1013
AvaII GGWCC 1 cut(s) 544
BauI CACGAG 1 cut(s) 512
BbsI GAAGAC 2 cut(s) 412, 957
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 167, 420
BcgI CGANNNNNNTGC 2 cut(s) 1004, 1038
BciT130I CCWGG 1 cut(s) 935
BciVI GTATCC 1 cut(s) 665
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 1055
BfaI CTAG 2 cut(s) 555, 804
BfuAI ACCTGC 2 cut(s) 405, 1030
BfuI GTATCC 1 cut(s) 665
BglII AGATCT 1 cut(s) 591
BisI GCNGC 4 cut(s) 156, 409, 1068, 1115
BlsI GCNGC 4 cut(s) 157, 410, 1069, 1116
BmcAI AGTACT 1 cut(s) 741
Bme1390I CCNGG 2 cut(s) 83, 935
Bme18I GGWCC 1 cut(s) 544
BmeT110I CYCGRG 1 cut(s) 1013
BmgBI CACGTC 1 cut(s) 467
BmgT120I GGNCC 2 cut(s) 206, 544
BmiI GGNNCC 3 cut(s) 7, 545, 681
BmrFI CCNGG 2 cut(s) 83, 935
BmrI ACTGGG 1 cut(s) 771
BmsI GCATC 2 cut(s) 152, 931
BmtI GCTAGC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 771
BpiI GAAGAC 2 cut(s) 412, 957
BpmI CTGGAG 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 1032
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bse1I ACTGG 1 cut(s) 766
Bse3DI GCAATG 3 cut(s) 30, 565, 699
BseBI CCWGG 1 cut(s) 935
BseDI CCNNGG 1 cut(s) 1032
BseGI GGATG 2 cut(s) 534, 784
BseMI GCAATG 3 cut(s) 30, 565, 699
BseMII CTCAG 4 cut(s) 108, 241, 264, 1050
BseNI ACTGG 1 cut(s) 766
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 167, 420
Bsh1236I CGCG 1 cut(s) 1117
BshFI GGCC 4 cut(s) 208, 636, 955, 1092
BsiHKCI CYCGRG 1 cut(s) 1013
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 2 cut(s) 557, 676
BsmAI GTCTC 1 cut(s) 1055
BsmFI GGGAC 2 cut(s) 557, 676
BsnI GGCC 4 cut(s) 208, 636, 955, 1092
BsoBI CYCGRG 1 cut(s) 1013
Bsp143I GATC 5 cut(s) 591, 615, 753, 886, 1048
BspACI CCGC 2 cut(s) 1068, 1115
BspANI GGCC 4 cut(s) 208, 636, 955, 1092
BspCNI CTCAG 4 cut(s) 109, 240, 265, 1051
BspFNI CGCG 1 cut(s) 1117
BspLI GGNNCC 3 cut(s) 7, 545, 681
BspMI ACCTGC 2 cut(s) 405, 1030
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 2 cut(s) 623, 881
BsrDI GCAATG 3 cut(s) 30, 565, 699
BsrI ACTGG 1 cut(s) 766
BssECI CCNNGG 1 cut(s) 1032
BssMI GATC 5 cut(s) 591, 615, 753, 886, 1048
BssSI CACGAG 1 cut(s) 512
Bst2BI CACGAG 1 cut(s) 512
Bst2UI CCWGG 1 cut(s) 935
Bst4CI ACNGT 3 cut(s) 575, 997, 1099
BstC8I GCNNGC 2 cut(s) 556, 778
BstDEI CTNAG 7 cut(s) 117, 227, 273, 588, 902, 1004, 1059
BstDSI CCRYGG 1 cut(s) 1032
BstF5I GGATG 2 cut(s) 534, 784
BstFNI CGCG 1 cut(s) 1117
BstKTI GATC 5 cut(s) 594, 618, 756, 889, 1051
BstMAI GTCTC 1 cut(s) 1055
BstMBI GATC 5 cut(s) 591, 615, 753, 886, 1048
BstNI CCWGG 1 cut(s) 935
BstNSI RCATGY 2 cut(s) 74, 155
BstSCI CCNGG 2 cut(s) 81, 933
BstUI CGCG 1 cut(s) 1117
BstV1I GCAGC 2 cut(s) 167, 420
BstV2I GAAGAC 2 cut(s) 412, 957
BstX2I RGATCY 2 cut(s) 591, 615
BstYI RGATCY 2 cut(s) 591, 615
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 4 cut(s) 208, 636, 955, 1092
BtgI CCRYGG 1 cut(s) 1032
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 2 cut(s) 534, 784
BtsIMutI CAGTG 3 cut(s) 235, 580, 1044
BveI ACCTGC 2 cut(s) 405, 1030
Cac8I GCNNGC 2 cut(s) 556, 778
CaiI CAGNNNCTG 1 cut(s) 1070
Cfr13I GGNCC 2 cut(s) 206, 544
Csp6I GTAC 3 cut(s) 124, 224, 740
CviQI GTAC 3 cut(s) 124, 224, 740
DdeI CTNAG 7 cut(s) 117, 227, 273, 588, 902, 1004, 1059
DpnI GATC 5 cut(s) 593, 617, 755, 888, 1050
DpnII GATC 5 cut(s) 591, 615, 753, 886, 1048
Eco32I GATATC 1 cut(s) 908
Eco47I GGWCC 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 1013
EcoO109I RGGNCCY 1 cut(s) 544
EcoRI GAATTC 2 cut(s) 290, 498
EcoRII CCWGG 1 cut(s) 933
EcoRV GATATC 1 cut(s) 908
EcoT22I ATGCAT 1 cut(s) 823
FaqI GGGAC 2 cut(s) 557, 676
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 1 cut(s) 1048
Fnu4HI GCNGC 4 cut(s) 156, 409, 1068, 1115
FokI GGATG 2 cut(s) 521, 771
Fsp4HI GCNGC 4 cut(s) 156, 409, 1068, 1115
FspBI CTAG 2 cut(s) 555, 804
GluI GCNGC 4 cut(s) 156, 409, 1068, 1115
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 4 cut(s) 208, 636, 955, 1092
HapII CCGG 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 5 cut(s) 176, 431, 518, 878, 1041
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 58, 1021
Hpy166II GTNNAC 3 cut(s) 214, 224, 472
Hpy188I TCNGA 7 cut(s) 175, 274, 436, 598, 721, 737, 920
Hpy188III TCNNGA 4 cut(s) 253, 522, 683, 890
Hpy8I GTNNAC 3 cut(s) 214, 224, 472
HpyAV CCTTC 3 cut(s) 188, 626, 762
HpyCH4III ACNGT 3 cut(s) 575, 997, 1099
HpyCH4IV ACGT 4 cut(s) 91, 466, 796, 1107
HpyCH4V TGCA 7 cut(s) 23, 155, 448, 491, 623, 692, 821
HpyF3I CTNAG 7 cut(s) 117, 227, 273, 588, 902, 1004, 1059
HpySE526I ACGT 4 cut(s) 91, 466, 796, 1107
Ksp22I TGATCA 1 cut(s) 1048
Kzo9I GATC 5 cut(s) 591, 615, 753, 886, 1048
LmnI GCTCC 3 cut(s) 459, 685, 853
Lsp1109I GCAGC 2 cut(s) 167, 420
LweI GCATC 2 cut(s) 152, 931
MaeI CTAG 2 cut(s) 555, 804
MaeII ACGT 4 cut(s) 91, 466, 796, 1107
MaeIII GTNAC 4 cut(s) 230, 575, 811, 997
MalI GATC 5 cut(s) 593, 617, 755, 888, 1050
MboI GATC 5 cut(s) 591, 615, 753, 886, 1048
MboII GAAGA 4 cut(s) 412, 950, 957, 1050
MflI RGATCY 2 cut(s) 591, 615
MluCI AATT 5 cut(s) 167, 290, 486, 498, 827
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 2 cut(s) 621, 831
MnlI CCTC 8 cut(s) 112, 249, 280, 358, 364, 434, 508, 691
Mph1103I ATGCAT 1 cut(s) 823
MseI TTAA 2 cut(s) 62, 1086
MslI CAYNNNNRTG 1 cut(s) 820
MspA1I CMGCKG 1 cut(s) 1070
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 83, 935
MvaI CCWGG 1 cut(s) 935
MvnI CGCG 1 cut(s) 1117
NciI CCSGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 817
NdeII GATC 5 cut(s) 591, 615, 753, 886, 1048
NheI GCTAGC 1 cut(s) 554
NlaIV GGNNCC 3 cut(s) 7, 545, 681
NmuCI GTSAC 2 cut(s) 230, 575
NsiI ATGCAT 1 cut(s) 823
NspI RCATGY 2 cut(s) 74, 155
PciI ACATGT 1 cut(s) 70
PfeI GAWTC 4 cut(s) 176, 431, 878, 1041
PfoI TCCNGGA 2 cut(s) 81, 933
PkrI GCNGC 4 cut(s) 157, 410, 1069, 1116
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
PpuMI RGGWCCY 1 cut(s) 544
PscI ACATGT 1 cut(s) 70
PshBI ATTAAT 1 cut(s) 1086
PsiI TTATAA 1 cut(s) 479
Psp1406I AACGTT 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 933
PspGI CCWGG 1 cut(s) 933
PspN4I GGNNCC 3 cut(s) 7, 545, 681
PspPI GGNCC 2 cut(s) 206, 544
PspPPI RGGWCCY 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 2 cut(s) 591, 615
RsaI GTAC 3 cut(s) 125, 225, 741
RsaNI GTAC 3 cut(s) 124, 224, 740
RseI CAYNNNNRTG 1 cut(s) 820
SaqAI TTAA 2 cut(s) 62, 1086
SatI GCNGC 4 cut(s) 156, 409, 1068, 1115
Sau3AI GATC 5 cut(s) 591, 615, 753, 886, 1048
Sau96I GGNCC 2 cut(s) 206, 544
ScaI AGTACT 1 cut(s) 741
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 2 cut(s) 83, 935
SfaNI GCATC 2 cut(s) 152, 931
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 1 cut(s) 820
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
Sse9I AATT 5 cut(s) 167, 290, 486, 498, 827
SsiI CCGC 2 cut(s) 1068, 1115
SspMI CTAG 2 cut(s) 555, 804
StyD4I CCNGG 2 cut(s) 81, 933
TaaI ACNGT 3 cut(s) 575, 997, 1099
TaiI ACGT 4 cut(s) 94, 469, 799, 1110
TaqI TCGA 3 cut(s) 523, 861, 876
TasI AATT 5 cut(s) 167, 290, 486, 498, 827
TatI WGTACW 2 cut(s) 223, 739
TauI GCSGC 2 cut(s) 1070, 1117
TfiI GAWTC 4 cut(s) 176, 431, 878, 1041
Tru1I TTAA 2 cut(s) 62, 1086
Tru9I TTAA 2 cut(s) 62, 1086
TscAI CASTG 3 cut(s) 235, 580, 1051
TseFI GTSAC 2 cut(s) 230, 575
TseI GCWGC 2 cut(s) 155, 408
Tsp45I GTSAC 2 cut(s) 230, 575
TspDTI ATGAA 6 cut(s) 315, 332, 405, 596, 773, 870
TspGWI ACGGA 6 cut(s) 176, 249, 299, 684, 700, 855
TspRI CASTG 3 cut(s) 235, 580, 1051
VpaK11BI GGWCC 1 cut(s) 544
VspI ATTAAT 1 cut(s) 1086
XapI RAATTY 3 cut(s) 167, 290, 498
XceI RCATGY 2 cut(s) 74, 155
XspI CTAG 2 cut(s) 555, 804
ZrmI AGTACT 1 cut(s) 741
Zsp2I ATGCAT 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.