Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000635

Physical Location & Seq

Genomic Coordinates Forward (+)

34203500 .. 34204560

Gene Structure 1061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1249100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTAAAAATTAACTGCAAATACATAGTTGTTTCCAATGAAGGTGTAGGATGGAGGATCACGATCCTTACGGTTGTGTCAGCATGTCTAGCCATACTACTTTTGGGTTCCTGTGTCTATCTTGCAATAAGAAAAAGAAACAAAAAGGGTAATAATAATGCGTTTGGAAATGCTTTAAAGCTGATCATCACTGTAATATATTTTCTGAAAGCAGCTTTTCTTTCGATCTGTTCAGGGAGTAGTGAGATTTTAAGACAACATGTATTGTTCCCGGACCGAAGTTTTCAAGGCAGAAACCAGAAAGCTGAGGAGTACCCCTATATCAGTTTGGCATCTATACATGCAGCTACGGATAAATTTTCTGATTCAAATAAGCTCGGAGAAGGTGGTTTTGGGCCTGTTTACAAGGGTGTACTGAGTGACGGTAAAGAAGTGGCGATCAAGAGGCTTTCAAGCTGTTCTGAGCAAGGCTCAGAGGAATTCACAAATGAAGTTCGGCTGCTAATGAAACTTCAACATAAAAATCTTGTTAGGCTTTTGGGTTTTTGTGTTGAGGGAAAGGAAAAACTGCTTGTCTATGAATACCTGCCAAACAGCAGCCTAAATGTCTTCCTCTTTGATTCAGAGAAACGAGCGCAGCTTGATTGGAGCAGACGTGTAAACATTATAAGTGGAATTGCACGGGGAATTCTTTATTTACACGAGGACTCTCGACTTCAAATCATCCATAGAGACTTCAAATCATCCATTAGTAATGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002181 GO:0003674 GO:0003735 GO:0003824 GO:0004672 GO:0004674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006464 GO:0006468 GO:0006518 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0022626 GO:0022627 GO:0031625 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044389 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046777 GO:0050896 GO:0051716 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

255

Amino Acids

28.51

Weight (kDa)

9.4

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	121 - 248	6.1e-22	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	123 - 246	1.8e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica	MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica	Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis	pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis	RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata	RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora	Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa	Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha	Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana	Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
Acc36I	ACCTGC	1 cut(s)	594
AclWI	GGATC	2 cut(s)	58, 65
AcsI	RAATTY	3 cut(s)	356, 479, 687
AfaI	GTAC	2 cut(s)	314, 414
AflIII	ACRYGT	2 cut(s)	259, 655
AgsI	TTSAA	6 cut(s)	287, 369, 453, 515, 719, 739
AjiI	CACGTC	1 cut(s)	656
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	7 cut(s)	181, 215, 305, 347, 376, 456, 640
AluI	AGCT	7 cut(s)	181, 215, 305, 347, 376, 456, 640
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	2 cut(s)	58, 65
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	5 cut(s)	212, 344, 499, 597, 637
ApoI	RAATTY	3 cut(s)	356, 479, 687
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	2 cut(s)	274, 395
AsuC2I	CCSGG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	701
BbsI	GAAGAC	1 cut(s)	601
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	5 cut(s)	224, 356, 486, 609, 649
BccI	CCATC	1 cut(s)	45
BclI	TGATCA	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	726
BfaI	CTAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	594
BisI	GCNGC	5 cut(s)	213, 345, 500, 598, 638
BlsI	GCNGC	5 cut(s)	214, 346, 501, 599, 639
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	656
BmgT120I	GGNCC	2 cut(s)	274, 395
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	601
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
Bpu10I	CCTNAGC	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bse8I	GATNNNNATC	1 cut(s)	62
BseGI	GGATG	3 cut(s)	56, 723, 743
BseJI	GATNNNNATC	1 cut(s)	62
BseMII	CTCAG	4 cut(s)	297, 407, 453, 486
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	5 cut(s)	224, 356, 486, 609, 649
BshFI	GGCC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	726
BsnI	GGCC	1 cut(s)	397
Bsp143I	GATC	5 cut(s)	57, 63, 183, 225, 438
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	4 cut(s)	298, 408, 454, 485
BspLI	GGNNCC	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	58, 65
BssMI	GATC	5 cut(s)	57, 63, 183, 225, 438
BssSI	CACGAG	1 cut(s)	701
Bst2BI	CACGAG	1 cut(s)	701
Bst4CI	ACNGT	3 cut(s)	73, 193, 425
BstDEI	CTNAG	4 cut(s)	306, 416, 462, 472
BstF5I	GGATG	3 cut(s)	56, 723, 743
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	5 cut(s)	60, 66, 186, 228, 441
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	5 cut(s)	57, 63, 183, 225, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNSI	RCATGY	3 cut(s)	87, 263, 344
BstSCI	CCNGG	1 cut(s)	270
BstV1I	GCAGC	5 cut(s)	224, 356, 486, 609, 649
BstV2I	GAAGAC	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	397
BtrI	CACGTC	1 cut(s)	656
BtsCI	GGATG	3 cut(s)	56, 723, 743
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	594
CfoI	GCGC	1 cut(s)	637
Cfr13I	GGNCC	2 cut(s)	274, 395
CpoI	CGGWCCG	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	313, 413
CspI	CGGWCCG	1 cut(s)	274
CviAII	CATG	3 cut(s)	84, 260, 341
CviQI	GTAC	2 cut(s)	313, 413
DdeI	CTNAG	4 cut(s)	306, 416, 462, 472
DpnI	GATC	5 cut(s)	59, 65, 185, 227, 440
DpnII	GATC	5 cut(s)	57, 63, 183, 225, 438
DraI	TTTAAA	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	274
EcoRI	GAATTC	2 cut(s)	479, 687
FaeI	CATG	3 cut(s)	87, 263, 344
FatI	CATG	3 cut(s)	83, 259, 340
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	5 cut(s)	213, 345, 500, 598, 638
FokI	GGATG	3 cut(s)	63, 710, 730
Fsp4HI	GCNGC	5 cut(s)	213, 345, 500, 598, 638
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	5 cut(s)	213, 345, 500, 598, 638
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	3 cut(s)	87, 263, 344
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HinfI	GANTC	3 cut(s)	365, 620, 707
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	403, 413, 661
Hpy188I	TCNGA	6 cut(s)	207, 364, 380, 463, 475, 625
Hpy188III	TCNNGA	3 cut(s)	61, 442, 711
Hpy8I	GTNNAC	3 cut(s)	403, 413, 661
HpyAV	CCTTC	2 cut(s)	35, 377
HpyCH4III	ACNGT	3 cut(s)	73, 193, 425
HpyCH4IV	ACGT	1 cut(s)	655
HpyCH4V	TGCA	4 cut(s)	18, 125, 344, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	4 cut(s)	306, 416, 462, 472
HpySE526I	ACGT	1 cut(s)	655
Hsp92II	CATG	3 cut(s)	87, 263, 344
HspAI	GCGC	1 cut(s)	635
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	5 cut(s)	57, 63, 183, 225, 438
LmnI	GCTCC	1 cut(s)	648
LpnPI	CCDG	6 cut(s)	124, 219, 285, 311, 411, 599
Lsp1109I	GCAGC	5 cut(s)	224, 356, 486, 609, 649
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	5 cut(s)	59, 65, 185, 227, 440
MboI	GATC	5 cut(s)	57, 63, 183, 225, 438
MboII	GAAGA	1 cut(s)	601
MluCI	AATT	5 cut(s)	9, 356, 479, 675, 687
MlyI	GAGTC	1 cut(s)	701
MnlI	CCTC	7 cut(s)	48, 301, 438, 469, 547, 623, 697
MseI	TTAA	4 cut(s)	5, 12, 176, 251
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	5 cut(s)	57, 63, 183, 225, 438
NlaIII	CATG	3 cut(s)	87, 263, 344
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	3 cut(s)	87, 263, 344
PciI	ACATGT	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	365, 620
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	5 cut(s)	214, 346, 501, 599, 639
PleI	GAGTC	1 cut(s)	701
PpsI	GAGTC	1 cut(s)	701
PscI	ACATGT	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	668
PspN4I	GGNNCC	1 cut(s)	109
PspPI	GGNCC	2 cut(s)	274, 395
RsaI	GTAC	2 cut(s)	314, 414
RsaNI	GTAC	2 cut(s)	313, 413
Rsr2I	CGGWCCG	1 cut(s)	274
RsrII	CGGWCCG	1 cut(s)	274
SaqAI	TTAA	4 cut(s)	5, 12, 176, 251
SatI	GCNGC	5 cut(s)	213, 345, 500, 598, 638
Sau3AI	GATC	5 cut(s)	57, 63, 183, 225, 438
Sau96I	GGNCC	2 cut(s)	274, 395
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	272
SfaNI	GCATC	1 cut(s)	341
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	5 cut(s)	9, 356, 479, 675, 687
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	73, 193, 425
TaiI	ACGT	1 cut(s)	658
TaqI	TCGA	2 cut(s)	224, 712
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	5 cut(s)	9, 356, 479, 675, 687
TatI	WGTACW	1 cut(s)	412
TfiI	GAWTC	2 cut(s)	365, 620
Tru1I	TTAA	4 cut(s)	5, 12, 176, 251
Tru9I	TTAA	4 cut(s)	5, 12, 176, 251
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	5 cut(s)	212, 344, 499, 597, 637
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	4 cut(s)	54, 504, 521, 594
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	3 cut(s)	356, 479, 687
XceI	RCATGY	3 cut(s)	87, 263, 344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.