Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000635

Physical Location & Seq

Genomic Coordinates Forward (+)

2677128 .. 2677868

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG040700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGCGATCCGCTTTCAGTTATGATTTTCATAATTATACTACTTTTAATGCCTACTACCATTTCTGGTGCAGATCTTCTTTTCAAAGATTGTCCATCCACAAACTATACTGCCAAGAGTTCATTTGAAAATAATCTCAAGCTACTCCTCGACTCATTGTCTTCCAATACTTCAATCTATGGTGGTTTCTACAATGACACGATTGGCAATAGCAGTGACCACGTCTATGGACAAGCACTTTGTAGAGGGGATGTAAACTCCACAGTTTGTCAGAGCTGTGTTCATGATGCAAGCCAGGAAATCAAGAGTTGTAAAACTCAAGAAGCAATCATATGGTATGATCTATGTCAAGTTCACTATTCCTCTGCCCCGTTCTTTTCAATGATGTTATATGGTGGGAAGCTTCCTGAGAAGAATAAGCAGGAGAAGAATGTAACAAATCCCAAGCAGTTATTTGATGTTTTGAATAATTTAATGACAAAGCTCTTGGACCAGACTGCCTATACTTCTAAGGATATGTTTGCAACCGGCTATATGAAATTTTCAGGAAAGCAATCTATTTATGGCCTACAACAGTGCACTAGAGACATTTCTGAAGATGAATGCCATAACTGTTTGAATTCTGCTCGTGAGGAGCTTCAGGTATGCTGCTCTGCTCGCGAAGGTGGAACTGTTGTTAGTAGGAATTGTAATGTGAGGTTTGAGCTCTACCAATTTTTCAACTACATTTCCAAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase_Tyr Stress-antifung

Protein Analysis

246

Amino Acids

27.57

Weight (kDa)

5.58

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 122	1e-23	Salt stress response/antifungal
Stress-antifung	PF01657	141 - 236	2.6e-13	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000635)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica	MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica	Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis	pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis	RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata	RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora	Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa	Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha	Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana	Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	660
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	2
AcsI	RAATTY	2 cut(s)	539, 619
AcuI	CTGAAG	2 cut(s)	615, 623
AgsI	TTSAA	7 cut(s)	85, 128, 174, 381, 466, 619, 721
AhdI	GACNNNNNGTC	1 cut(s)	157
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	6 cut(s)	142, 276, 403, 484, 637, 706
AluI	AGCT	6 cut(s)	142, 276, 403, 484, 637, 706
Alw21I	GWGCWC	2 cut(s)	581, 708
Alw26I	GTCTC	1 cut(s)	579
Alw44I	GTGCAC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	2
AoxI	GGCC	1 cut(s)	565
ApaLI	GTGCAC	1 cut(s)	577
ApeKI	GCWGC	1 cut(s)	648
ApoI	RAATTY	2 cut(s)	539, 619
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspS9I	GGNCC	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	490
BaeGI	GKGCMC	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	708
BauI	CACGAG	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	581, 708
BbvI	GCAGC	1 cut(s)	635
BccI	CCATC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	1 cut(s)	582
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	649
BlsI	GCNGC	1 cut(s)	650
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	490
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	122, 303
Bse118I	RCCGGY	1 cut(s)	527
BseBI	CCWGG	1 cut(s)	296
BseGI	GGATG	2 cut(s)	95, 256
BseMII	CTCAG	1 cut(s)	399
BseRI	GAGGAG	2 cut(s)	137, 647
BseSI	GKGCMC	1 cut(s)	581
BseXI	GCAGC	1 cut(s)	635
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	1 cut(s)	567
BsiHKAI	GWGCWC	2 cut(s)	581, 708
BsiSI	CCGG	1 cut(s)	528
BsmAI	GTCTC	1 cut(s)	579
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	581, 708
Bsp143I	GATC	3 cut(s)	7, 73, 340
Bsp68I	TCGCGA	1 cut(s)	660
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	660
BspHI	TCATGA	1 cut(s)	283
BspPI	GGATC	1 cut(s)	2
BsrFI	RCCGGY	1 cut(s)	527
BssAI	RCCGGY	1 cut(s)	527
BssMI	GATC	3 cut(s)	7, 73, 340
BssSI	CACGAG	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	4 cut(s)	265, 576, 614, 673
BstC8I	GCNNGC	2 cut(s)	292, 658
BstDEI	CTNAG	2 cut(s)	408, 510
BstF5I	GGATG	2 cut(s)	95, 256
BstFNI	CGCG	1 cut(s)	660
BstKTI	GATC	3 cut(s)	10, 76, 343
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	3 cut(s)	7, 73, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	657
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	581
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	1 cut(s)	635
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	567
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	95, 256
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	220, 581
BtuMI	TCGCGA	1 cut(s)	660
Cac8I	GCNNGC	2 cut(s)	292, 658
CciI	TCATGA	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	1 cut(s)	490
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	9 cut(s)	142, 276, 294, 403, 484, 531, 567, 637, 706
CviKI_1	RGCY	9 cut(s)	142, 276, 294, 403, 484, 531, 567, 637, 706
DdeI	CTNAG	2 cut(s)	408, 510
DpnI	GATC	3 cut(s)	9, 75, 342
DpnII	GATC	3 cut(s)	7, 73, 340
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	706
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	706
Eco57I	CTGAAG	2 cut(s)	615, 623
EcoICRI	GAGCTC	1 cut(s)	706
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	708
FaeI	CATG	1 cut(s)	287
FatI	CATG	1 cut(s)	283
FauNDI	CATATG	1 cut(s)	332
Fnu4HI	GCNGC	1 cut(s)	649
FokI	GGATG	2 cut(s)	82, 263
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	1 cut(s)	649
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	1 cut(s)	649
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	1 cut(s)	528
Hin1II	CATG	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	528
Hpy166II	GTNNAC	3 cut(s)	256, 355, 579
Hpy188I	TCNGA	2 cut(s)	273, 595
Hpy188III	TCNNGA	7 cut(s)	284, 304, 320, 407, 546, 629, 659
Hpy8I	GTNNAC	3 cut(s)	256, 355, 579
HpyAV	CCTTC	1 cut(s)	656
HpyCH4III	ACNGT	4 cut(s)	265, 576, 614, 673
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	71, 290, 524, 579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	657
HpyF3I	CTNAG	2 cut(s)	408, 510
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	287
Kzo9I	GATC	3 cut(s)	7, 73, 340
LmnI	GCTCC	1 cut(s)	634
LpnPI	CCDG	9 cut(s)	51, 281, 308, 407, 420, 506, 531, 541, 626
Lsp1109I	GCAGC	1 cut(s)	635
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	215, 433
MalI	GATC	3 cut(s)	9, 75, 342
MboI	GATC	3 cut(s)	7, 73, 340
MboII	GAAGA	5 cut(s)	68, 153, 424, 439, 608
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	2 cut(s)	581, 708
MluCI	AATT	6 cut(s)	33, 469, 539, 619, 685, 713
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	5 cut(s)	158, 239, 373, 625, 690
MseI	TTAA	2 cut(s)	47, 473
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	1 cut(s)	657
NdeI	CATATG	1 cut(s)	332
NdeII	GATC	3 cut(s)	7, 73, 340
NlaIII	CATG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	215
NruI	TCGCGA	1 cut(s)	660
PagI	TCATGA	1 cut(s)	283
PctI	GAATGC	1 cut(s)	608
PflFI	GACNNNGTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	650
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	221
RruI	TCGCGA	1 cut(s)	660
RseI	CAYNNNNRTG	1 cut(s)	225
SacI	GAGCTC	1 cut(s)	708
SaqAI	TTAA	2 cut(s)	47, 473
SatI	GCNGC	1 cut(s)	649
Sau3AI	GATC	3 cut(s)	7, 73, 340
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	581, 708
SfaNI	GCATC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	137, 318
SmoI	CTYRAG	2 cut(s)	137, 318
Sse9I	AATT	6 cut(s)	33, 469, 539, 619, 685, 713
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	582
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	265, 576, 614, 673
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	1 cut(s)	150
TasI	AATT	6 cut(s)	33, 469, 539, 619, 685, 713
Tru1I	TTAA	2 cut(s)	47, 473
Tru9I	TTAA	2 cut(s)	47, 473
TscAI	CASTG	2 cut(s)	220, 581
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	648
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	5 cut(s)	19, 111, 272, 551, 615
TspRI	CASTG	2 cut(s)	220, 581
Tth111I	GACNNNGTC	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	2 cut(s)	539, 619
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.