Rorug04G0410600

Salt stress response/antifungal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000635
Physical Location & Seq
Forward (+)
57326541 .. 57328577
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0410600.1

Sequence Viewer

Length: 792 bp
ATGAGGAAACCCTGCTGCGACAAGCAAGACACGAACAAAGGAGCTTGGTCGAAACAAGAAGATCAGAAGCTCATCGATTACATTCGCAAACATGGTGAGGGTTGTTGGCGTACCCTCCCTCAAGCCGCAGGCCTGCTTCGATGCGGTAAAAGTTGCAGACTTCGGTGGATAAACTATCTACGGCCAGACCTTAAAAGGGGCAAGTTTGCTGAAGATGAAGAAGACCTCATCATTAAACTTCATGCACTCCTAGGCAATCGGTGGTCGCTTATTGCTGGAAGATTGCCGGGACGTACAGACAATGAAGTGAAGAACTATTGGAACTCGCATTTGAGAAGAAAGCTTATGAACATGGGTATAGATCCAAACAACCATCGACCAACCAACACTCTCCTCCCTCGGCCTCATAATCATCATCAAAGCCCACCACAAACACTAAAATCACCAGCTGGTTCTGGTATCAATAATTTTAATCATGAGCCAGTAGTGATAGAGTCCAAAAGTTTGCGTGGTGATGATCAAAATTGCGAGCAAGTATCGGATGGCAGAAGTTGCTTGGAGGATGATTCTTCTTGTGGCGGTCATCACCTGCCTGATTTAAACCTTGATCTCACTGTCCATCTCAGTGCTCCTAATTTCTCTTCACCTAATGATGATCATCAATATCTCATTAAGGAGCTTAATGAGCCAATTCATCGTCCTCATCTCAACATTAGTGACCCCCCTGAAATGTCGATTGGGACCAAGTCAGCAATATTTGCCTCATCTACCACGCTTCCTCTCTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr Stress-antifung

Protein Analysis

263

Amino Acids

29.86

Weight (kDa)

8.4

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 1.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 1e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 111 5.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 115 1.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 597
Acc36I ACCTGC 1 cut(s) 597
AciI CCGC 3 cut(s) 126, 144, 579
AclWI GGATC 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 182
AcuI CTGAAG 2 cut(s) 231, 769
AfaI GTAC 2 cut(s) 112, 295
AfiI CCNNNNNNNGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 720, 752
AluBI AGCT 5 cut(s) 44, 70, 343, 449, 679
AluI AGCT 5 cut(s) 44, 70, 343, 449, 679
Alw21I GWGCWC 1 cut(s) 631
AlwI GGATC 1 cut(s) 356
AoxI GGCC 3 cut(s) 130, 182, 401
ApeKI GCWGC 1 cut(s) 15
AspA2I CCTAGG 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 741
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 5 cut(s) 107, 435, 524, 578, 636
AvaII GGWCC 1 cut(s) 741
AvrII CCTAGG 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 1 cut(s) 2
BccI CCATC 3 cut(s) 381, 536, 627
BceAI ACGGC 1 cut(s) 197
BclI TGATCA 2 cut(s) 517, 655
BcnI CCSGG 1 cut(s) 288
BfaI CTAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 597
BisI GCNGC 2 cut(s) 16, 126
BlnI CCTAGG 1 cut(s) 250
BlsI GCNGC 2 cut(s) 17, 127
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 741
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 1 cut(s) 742
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 288
Bsa29I ATCGAT 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 657
BsaJI CCNNGG 2 cut(s) 250, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 482
Bse8I GATNNNNATC 1 cut(s) 657
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 250, 398
BseGI GGATG 2 cut(s) 547, 568
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 637
BseNI ACTGG 1 cut(s) 482
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 2
BshFI GGCC 3 cut(s) 132, 184, 403
BshVI ATCGAT 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 287
BslFI GGGAC 2 cut(s) 303, 754
BslI CCNNNNNNNGG 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 303, 754
BsnI GGCC 3 cut(s) 132, 184, 403
Bsp1286I GDGCHC 1 cut(s) 631
Bsp143I GATC 5 cut(s) 61, 361, 517, 607, 655
BspACI CCGC 3 cut(s) 126, 144, 579
BspANI GGCC 3 cut(s) 132, 184, 403
BspCNI CTCAG 1 cut(s) 636
BspDI ATCGAT 1 cut(s) 75
BspHI TCATGA 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 742
BspMI ACCTGC 1 cut(s) 597
BspPI GGATC 1 cut(s) 356
BsrI ACTGG 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 250, 398
BssMI GATC 5 cut(s) 61, 361, 517, 607, 655
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 2 cut(s) 646, 788
BstAPI GCANNNNNTGC 2 cut(s) 552, 758
BstC8I GCNNGC 3 cut(s) 130, 134, 530
BstDEI CTNAG 1 cut(s) 623
BstF5I GGATG 2 cut(s) 547, 568
BstKTI GATC 5 cut(s) 64, 364, 520, 610, 658
BstMBI GATC 5 cut(s) 61, 361, 517, 607, 655
BstMWI GCNNNNNNNGC 3 cut(s) 552, 685, 758
BstSCI CCNGG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 2
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 3 cut(s) 132, 184, 403
BsuTUI ATCGAT 1 cut(s) 75
BtsCI GGATG 2 cut(s) 547, 568
BtsIMutI CAGTG 2 cut(s) 612, 631
BveI ACCTGC 1 cut(s) 597
Cac8I GCNNGC 3 cut(s) 130, 134, 530
CciI TCATGA 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 741
ClaI ATCGAT 1 cut(s) 75
Csp6I GTAC 2 cut(s) 111, 294
CviAII CATG 4 cut(s) 92, 242, 352, 476
CviQI GTAC 2 cut(s) 111, 294
DdeI CTNAG 1 cut(s) 623
DpnI GATC 5 cut(s) 63, 363, 519, 609, 657
DpnII GATC 5 cut(s) 61, 361, 517, 607, 655
DraI TTTAAA 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 646, 788
EarI CTCTTC 2 cut(s) 646, 788
Eco130I CCWWGG 1 cut(s) 250
Eco147I AGGCCT 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 741
Eco57I CTGAAG 2 cut(s) 231, 769
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 4 cut(s) 95, 245, 355, 479
FaiI YATR 7 cut(s) 93, 243, 347, 353, 359, 408, 477
FaqI GGGAC 2 cut(s) 303, 754
FatI CATG 4 cut(s) 91, 241, 351, 475
FbaI TGATCA 2 cut(s) 517, 655
Fnu4HI GCNGC 2 cut(s) 16, 126
FokI GGATG 2 cut(s) 554, 575
Fsp4HI GCNGC 2 cut(s) 16, 126
FspBI CTAG 1 cut(s) 251
GluI GCNGC 2 cut(s) 16, 126
HaeIII GGCC 3 cut(s) 132, 184, 403
HapII CCGG 1 cut(s) 287
Hin1II CATG 4 cut(s) 95, 245, 355, 479
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 2 cut(s) 494, 566
HpaII CCGG 1 cut(s) 287
HphI GGTGA 5 cut(s) 107, 435, 524, 578, 636
Hpy188I TCNGA 3 cut(s) 66, 541, 788
Hpy188III TCNNGA 1 cut(s) 476
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 156, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 552, 685, 758
HpyF3I CTNAG 1 cut(s) 623
HpySE526I ACGT 1 cut(s) 292
Hsp92II CATG 4 cut(s) 95, 245, 355, 479
Ksp22I TGATCA 2 cut(s) 517, 655
Kzo9I GATC 5 cut(s) 61, 361, 517, 607, 655
LmnI GCTCC 3 cut(s) 41, 634, 676
Lsp1109I GCAGC 1 cut(s) 2
LweI GCATC 1 cut(s) 131
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 716
MalI GATC 5 cut(s) 63, 363, 519, 609, 657
MboI GATC 5 cut(s) 61, 361, 517, 607, 655
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 4 cut(s) 466, 523, 634, 690
MlyI GAGTC 1 cut(s) 503
MseI TTAA 6 cut(s) 192, 234, 471, 599, 672, 681
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 552, 685, 758
NciI CCSGG 1 cut(s) 288
NdeII GATC 5 cut(s) 61, 361, 517, 607, 655
NlaIII CATG 4 cut(s) 95, 245, 355, 479
NlaIV GGNNCC 1 cut(s) 742
NmeAIII GCCGAG 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 716
PagI TCATGA 1 cut(s) 475
PaqCI CACCTGC 1 cut(s) 597
PceI AGGCCT 1 cut(s) 132
PfeI GAWTC 1 cut(s) 566
PflFI GACNNNGTC 1 cut(s) 745
PkrI GCNGC 2 cut(s) 17, 127
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PspN4I GGNNCC 1 cut(s) 742
PspPI GGNCC 1 cut(s) 741
PsuI RGATCY 1 cut(s) 361
PsyI GACNNNGTC 1 cut(s) 745
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 112, 295
RsaNI GTAC 2 cut(s) 111, 294
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 6 cut(s) 192, 234, 471, 599, 672, 681
SatI GCNGC 2 cut(s) 16, 126
Sau3AI GATC 5 cut(s) 61, 361, 517, 607, 655
Sau96I GGNCC 1 cut(s) 741
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 631
SfaNI GCATC 1 cut(s) 131
SinI GGWCC 1 cut(s) 741
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 4 cut(s) 466, 523, 634, 690
SseBI AGGCCT 1 cut(s) 132
SsiI CCGC 3 cut(s) 126, 144, 579
SspI AATATT 1 cut(s) 756
SspMI CTAG 1 cut(s) 251
StuI AGGCCT 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 1 cut(s) 295
TaqI TCGA 5 cut(s) 50, 75, 139, 376, 734
TasI AATT 4 cut(s) 466, 523, 634, 690
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 6 cut(s) 192, 234, 471, 599, 672, 681
Tru9I TTAA 6 cut(s) 192, 234, 471, 599, 672, 681
TscAI CASTG 2 cut(s) 619, 631
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 5 cut(s) 230, 231, 318, 362, 683
TspRI CASTG 2 cut(s) 619, 631
Tth111I GACNNNGTC 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 741
XmaJI CCTAGG 1 cut(s) 250
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.