Rmu_sc0000547.1_g000034

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000547.1
Physical Location & Seq
Forward (+)
150501 .. 151118
618 bp
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UTR
Exon/CDS
Intron
Rmu_sc0000547.1_g000034.1.cds

Sequence Viewer

Length: 618 bp
atgtttcgttttccagtactgtttttgctttgttctgtcatcatctctctcttttgtgatcatgcttatgctgatcctccatataagctatgctcaaacacttcctactattcagataatagtacgtttcagacaaacctcaacactctgctcaattcattaccttccaatgcttctgtttccaagttgtacaatacatcgtttggaaatgagccagataaagtctttgctctctacatgtgcctcgactatctcgaatctggttcctgtcatgattgcataaacatggcgcaacaagacattgcaaacatatgtccttactccaaagaagcggttgtatgggaggagaactgtcaactgcgctactccaatcagaatttctttggcagattgaatgtagatgacaacatccccttagataacaagaagaatatttcagttcctgaaaaattcgagacagttgtgaacaagacgctgagtaacctcgctgagcaggcggcttttaatcattcactgaacatgtatgccactggtgaagtaccctttcaagataaaatggtatatgctcttgtgcagtgcactacagacttatctgggaatgattgtgataccttctag

Protein Analysis

205

Amino Acids

23.18

Weight (kDa)

4.49

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 332, 497
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 2 cut(s) 376, 449
AfaI GTAC 4 cut(s) 18, 124, 191, 540
AflIII ACRYGT 2 cut(s) 237, 519
AgsI TTSAA 2 cut(s) 394, 548
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 581
Alw26I GTCTC 1 cut(s) 449
Alw44I GTGCAC 1 cut(s) 577
AlwI GGATC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 443
ApaLI GTGCAC 1 cut(s) 577
ApoI RAATTY 2 cut(s) 376, 449
AspLEI GCGC 2 cut(s) 292, 363
AsuHPI GGTGA 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 581
Bbv12I GWGCWC 1 cut(s) 581
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 616
BfmI CTRYAG 1 cut(s) 582
BisI GCNGC 1 cut(s) 498
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 499
BmcAI AGTACT 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 265
Bpu1102I GCTNAGC 1 cut(s) 489
Bse1I ACTGG 2 cut(s) 14, 535
Bse3DI GCAATG 1 cut(s) 300
BseGI GGATG 1 cut(s) 408
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 467, 480
BseNI ACTGG 2 cut(s) 14, 535
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 581
BsgI GTGCAG 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 581
BsmAI GTCTC 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 581
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 58, 73
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 2 cut(s) 332, 497
BspCNI CTCAG 2 cut(s) 468, 481
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 189
BsrI ACTGG 2 cut(s) 14, 535
BssMI GATC 2 cut(s) 58, 73
Bst4CI ACNGT 3 cut(s) 21, 353, 460
BstAUI TGTACA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 3 cut(s) 415, 476, 489
BstF5I GGATG 1 cut(s) 408
BstHHI GCGC 2 cut(s) 292, 363
BstKTI GATC 2 cut(s) 61, 76
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 2 cut(s) 58, 73
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNSI RCATGY 2 cut(s) 241, 523
BstSFI CTRYAG 1 cut(s) 582
BstSLI GKGCMC 1 cut(s) 581
BtsCI GGATG 1 cut(s) 408
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 3 cut(s) 512, 528, 581
Cac8I GCNNGC 1 cut(s) 495
CaiI CAGNNNCTG 1 cut(s) 443
CciI TCATGA 1 cut(s) 271
CfoI GCGC 2 cut(s) 292, 363
CseI GACGC 1 cut(s) 481
Csp6I GTAC 4 cut(s) 17, 123, 190, 539
CviAII CATG 5 cut(s) 62, 238, 272, 286, 520
CviJI RGCY 3 cut(s) 88, 214, 500
CviKI_1 RGCY 3 cut(s) 88, 214, 500
CviQI GTAC 4 cut(s) 17, 123, 190, 539
DdeI CTNAG 3 cut(s) 415, 476, 489
DpnI GATC 2 cut(s) 60, 75
DpnII GATC 2 cut(s) 58, 73
FaeI CATG 5 cut(s) 65, 241, 275, 289, 523
FatI CATG 5 cut(s) 61, 237, 271, 285, 519
FauNDI CATATG 1 cut(s) 311
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 498
FspBI CTAG 1 cut(s) 616
GlaI GCGC 2 cut(s) 291, 362
GluI GCNGC 1 cut(s) 498
HgaI GACGC 1 cut(s) 481
HhaI GCGC 2 cut(s) 292, 363
Hin1II CATG 5 cut(s) 65, 241, 275, 289, 523
Hin6I GCGC 2 cut(s) 290, 361
HinP1I GCGC 2 cut(s) 290, 361
HincII GTYRAC 1 cut(s) 356
HindII GTYRAC 1 cut(s) 356
HinfI GANTC 1 cut(s) 257
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 3 cut(s) 356, 466, 579
Hpy188I TCNGA 3 cut(s) 115, 132, 375
Hpy188III TCNNGA 5 cut(s) 254, 272, 443, 454, 548
Hpy8I GTNNAC 3 cut(s) 356, 466, 579
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 3 cut(s) 21, 353, 460
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 4 cut(s) 279, 305, 574, 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 3 cut(s) 415, 476, 489
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 5 cut(s) 65, 241, 275, 289, 523
HspAI GCGC 2 cut(s) 290, 361
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 2 cut(s) 58, 73
LpnPI CCDG 8 cut(s) 27, 228, 246, 280, 456, 479, 516, 579
MaeI CTAG 1 cut(s) 616
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 479
MalI GATC 2 cut(s) 60, 75
MboI GATC 2 cut(s) 58, 73
MboII GAAGA 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 581
MluCI AATT 3 cut(s) 154, 376, 449
MnlI CCTC 5 cut(s) 87, 149, 254, 337, 494
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 2 cut(s) 66, 284
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeI CATATG 1 cut(s) 311
NdeII GATC 2 cut(s) 58, 73
NlaIII CATG 5 cut(s) 65, 241, 275, 289, 523
NlaIV GGNNCC 1 cut(s) 265
NspI RCATGY 2 cut(s) 241, 523
PagI TCATGA 1 cut(s) 271
PciI ACATGT 2 cut(s) 237, 519
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 499
PscI ACATGT 2 cut(s) 237, 519
PspN4I GGNNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 443
RsaI GTAC 4 cut(s) 18, 124, 191, 540
RsaNI GTAC 4 cut(s) 17, 123, 190, 539
RseI CAYNNNNRTG 2 cut(s) 66, 284
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 2 cut(s) 58, 73
ScaI AGTACT 1 cut(s) 18
SduI GDGCHC 1 cut(s) 581
SetI ASST 6 cut(s) 90, 128, 141, 166, 486, 614
SfcI CTRYAG 1 cut(s) 582
SmiMI CAYNNNNRTG 2 cut(s) 66, 284
Sse9I AATT 3 cut(s) 154, 376, 449
SsiI CCGC 2 cut(s) 332, 497
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 616
TaaI ACNGT 3 cut(s) 21, 353, 460
TaiI ACGT 1 cut(s) 128
TaqI TCGA 3 cut(s) 246, 255, 453
TasI AATT 3 cut(s) 154, 376, 449
TatI WGTACW 2 cut(s) 16, 189
TauI GCSGC 1 cut(s) 500
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 3 cut(s) 519, 535, 581
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 3 cut(s) 519, 535, 581
VneI GTGCAC 1 cut(s) 577
XapI RAATTY 2 cut(s) 376, 449
XceI RCATGY 2 cut(s) 241, 523
XspI CTAG 1 cut(s) 616
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.