Rh5AG037900

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000635
Physical Location & Seq
Forward (+)
2664277 .. 2674275
9999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG037900.1

Sequence Viewer

Length: 435 bp
ATGAAACTCTGTCCTAAGTCAAAAGAAGCAATTGTATGGGACGAATGGTGCCAGCTGCGCTACTCCAATGAGAATTTTTTTGGCAGATTAAATGTATCGGACAACAACGTTCTTCAAGTCAATCCACAGAATATTTCAGAGCAGCCAGAAAAGTTTAAGTCTGTTGTGAATCAAAAGCTGAGTGAACTCGCTAAGAAAGCGGCTTATAATGATTCTTCTCCTAAGATGTATGCTACTGGAGAAGTGAATTTTGGAGATGAAGTGATATATGCTCTTGTGCAGTGTACTGCCGATTTATCTGAAGGTGACTGTGACAAATGCCTTCAGACAGCCACAGAAGACGTTTTAAGAGAATATTTCTTCTCCATGGGTGCAAGACTTTTCAGTCATAGTTGTTTTCTGAGTATACTTAACGCAAAAGCTACGTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3403 Pkinase_Tyr Stress-antifung

Protein Analysis

144

Amino Acids

16.27

Weight (kDa)

5.02

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 44 - 136 3.9e-12 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02731 FvH4_3g02732 FvH4_3g02732 FvH4_3g02732 FvH4_3g02751 FvH4_3g02752 FvH4_3g02770 FvH4_3g02770 FvH4_3g02770 FvH4_3g02771
malus_domestica MD10G1249000.v1.1 MD10G1249100.v1.1 MD10G1313300.v1.1 MD10G1313400.v1.1 MD10G1313500.v1.1 MD10G1313600.v1.1 MD10G1313800.v1.1
prunus_persica Prupe.4G027200_v2.0.a1 Prupe.6G140300_v2.0.a1 Prupe.6G140400_v2.0.a1 Prupe.6G140400_v2.0.a1
pyrus_communis pycom10g26540 pycom10g26560 pycom10g26580 pycom10g26600
rosa_chinensis RchiOBHm_Chr5g0004141 RchiOBHm_Chr5g0004151 RchiOBHm_Chr5g0004161
rosa_laevigata RLG00000031205 RLG00000031206 RLG00000031208 RLG00000031209 RLG00000031210
rosa_multiflora Rmu_co8256217.1_g000001 Rmu_co8309209.1_g000001 Rmu_sc0000547.1_g000034 Rmu_sc0004964.1_g000028 Rmu_sc0007868.1_g000001 Rmu_sc0010028.1_g000001 Rmu_sc0017938.1_g000001 Rmu_sc0027606.1_g000001 Rmu_sc0027892.1_g000001
rosa_roxburghii Rroxscaffold_1G00071540 Rroxscaffold_1G00071550 Rroxscaffold_1G00071610 Rroxscaffold_1G00071620 Rroxscaffold_1G00071640 Rroxscaffold_1G00071650 Rroxscaffold_1G00071790 Rroxscaffold_1G00071800 Rroxscaffold_1G00071810 Rroxscaffold_1G00071850 Rroxscaffold_1G00071860 Rroxscaffold_1G00071880 Rroxscaffold_1G00071890
rosa_rugosa Rorug04G0410500 Rorug04G0410500 Rorug04G0410500 Rorug04G0410600
rosa_samantha Rh5AG037700 Rh5AG037800 Rh5AG037900 Rh5AG038000 Rh5BG037000 Rh5BG037100 Rh5BG037200 Rh5CG040400 Rh5CG040500 Rh5CG040600 Rh5CG040700 Rh5DG036400 Rh5DG036600 Rh5DG036800
rosa_wichuraiana Rw5G003410 Rw5G003420 Rw5G003590 Rw5G003600 Rw5G003610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AasI GACNNNNNNGTC 1 cut(s) 384
AccB1I GGYRCC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 406
AciI CCGC 1 cut(s) 200
AclI AACGTT 1 cut(s) 108
AcsI RAATTY 2 cut(s) 73, 247
AcuI CTGAAG 2 cut(s) 308, 321
AfaI GTAC 1 cut(s) 286
AgsI TTSAA 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AluBI AGCT 3 cut(s) 55, 178, 422
AluI AGCT 3 cut(s) 55, 178, 422
ApeKI GCWGC 2 cut(s) 55, 142
ApoI RAATTY 2 cut(s) 73, 247
ArsI GACNNNNNNTTYG 1 cut(s) 410
AspLEI GCGC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 317
BanI GGYRCC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 2 cut(s) 42, 154
BisI GCNGC 3 cut(s) 56, 143, 201
BlsI GCNGC 3 cut(s) 57, 144, 202
BmiI GGNNCC 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 170, 392
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 2 cut(s) 42, 154
BsgI GTGCAG 1 cut(s) 299
BshNI GGYRCC 1 cut(s) 48
BslFI GGGAC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 53
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 1 cut(s) 200
BspCNI CTCAG 2 cut(s) 171, 393
BspLI GGNNCC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 366
BssNAI GTATAC 1 cut(s) 407
BssT1I CCWWGG 1 cut(s) 366
Bst1107I GTATAC 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 5 cut(s) 15, 179, 192, 222, 401
BstDSI CCRYGG 1 cut(s) 366
BstHHI GCGC 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 57, 197
BstV1I GCAGC 2 cut(s) 42, 154
BstV2I GAAGAC 1 cut(s) 345
BstZ17I GTATAC 1 cut(s) 407
BtgI CCRYGG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 53
CfoI GCGC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 285
CviAII CATG 1 cut(s) 367
CviJI RGCY 6 cut(s) 55, 145, 178, 203, 332, 422
CviKI_1 RGCY 6 cut(s) 55, 145, 178, 203, 332, 422
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 5 cut(s) 15, 179, 192, 222, 401
DrdI GACNNNNNNGTC 1 cut(s) 384
DseDI GACNNNNNNGTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 366
Eco57I CTGAAG 2 cut(s) 308, 321
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 370
FaiI YATR 8 cut(s) 37, 207, 231, 268, 270, 368, 390, 407
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 366
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 3 cut(s) 56, 143, 201
Fsp4HI GCNGC 3 cut(s) 56, 143, 201
GlaI GCGC 1 cut(s) 59
GluI GCNGC 3 cut(s) 56, 143, 201
GsuI CTGGAG 1 cut(s) 258
HhaI GCGC 1 cut(s) 60
Hin1II CATG 1 cut(s) 370
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 2 cut(s) 169, 212
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 3 cut(s) 185, 285, 407
Hpy188I TCNGA 5 cut(s) 100, 139, 301, 327, 402
Hpy8I GTNNAC 3 cut(s) 185, 285, 407
HpyAV CCTTC 2 cut(s) 296, 332
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 3 cut(s) 108, 342, 425
HpyCH4V TGCA 2 cut(s) 280, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 197
HpyF3I CTNAG 5 cut(s) 15, 179, 192, 222, 401
HpySE526I ACGT 3 cut(s) 108, 342, 425
Hsp92II CATG 1 cut(s) 370
HspAI GCGC 1 cut(s) 58
LpnPI CCDG 3 cut(s) 65, 159, 222
Lsp1109I GCAGC 2 cut(s) 42, 154
MaeII ACGT 3 cut(s) 108, 342, 425
MaeIII GTNAC 2 cut(s) 305, 311
MboII GAAGA 4 cut(s) 104, 207, 350, 352
MfeI CAATTG 1 cut(s) 30
MluCI AATT 4 cut(s) 30, 73, 247, 429
MseI TTAA 4 cut(s) 89, 156, 347, 411
MspA1I CMGCKG 1 cut(s) 55
MunI CAATTG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 57, 197
NcoI CCATGG 1 cut(s) 366
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 2 cut(s) 305, 311
PfeI GAWTC 2 cut(s) 169, 212
PkrI GCNGC 3 cut(s) 57, 144, 202
PsiI TTATAA 1 cut(s) 207
Psp1406I AACGTT 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 55
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 4 cut(s) 89, 156, 347, 411
SatI GCNGC 3 cut(s) 56, 143, 201
SetI ASST 7 cut(s) 57, 111, 180, 307, 345, 424, 428
SgeI CNNG 8 cut(s) 64, 128, 158, 200, 249, 287, 379, 387
Sse9I AATT 4 cut(s) 30, 73, 247, 429
SsiI CCGC 1 cut(s) 200
SspI AATATT 2 cut(s) 133, 356
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 3 cut(s) 111, 345, 428
TasI AATT 4 cut(s) 30, 73, 247, 429
TatI WGTACW 1 cut(s) 284
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 2 cut(s) 169, 212
Tru1I TTAA 4 cut(s) 89, 156, 347, 411
Tru9I TTAA 4 cut(s) 89, 156, 347, 411
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 2 cut(s) 305, 311
TseI GCWGC 2 cut(s) 55, 142
Tsp45I GTSAC 2 cut(s) 305, 311
TspDTI ATGAA 2 cut(s) 17, 273
TspRI CASTG 1 cut(s) 287
XapI RAATTY 2 cut(s) 73, 247
XmiI GTMKAC 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.